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LOC119891673 VIP36-like protein [ Micropterus salmoides (largemouth bass) ]

Gene ID: 119891673, updated on 19-Jun-2024

Summary

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Gene symbol
LOC119891673
Gene description
VIP36-like protein
Gene type
protein coding
RefSeq status
MODEL
Organism
Micropterus salmoides
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Centrarchiformes; Centrarchoidei; Centrarchidae; Micropterus
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Genomic context

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See LOC119891673 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
100 current ASM1485139v1 (GCF_014851395.1) Unplaced Scaffold NW_024044459.1 (4822681..4831147, complement)

NW_024044459.1Genomic Context describing neighboring genes Neighboring gene NMDA receptor synaptonuclear signaling and neuronal migration factor b Neighboring gene putative uncharacterized protein MYH16 Neighboring gene uncharacterized LOC119891152 Neighboring gene T-box transcription factor 3b

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024044459 Unplaced Scaffold Reference ASM1485139v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Discovery and validation of gene-linked diagnostic SNP markers for assessing hybridization between Largemouth bass (Micropterus salmoides) and Florida bass (M. floridanus). Li C, et al. Mol Ecol Resour, 2015 Mar. PMID 25047482

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables D-mannose binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Golgi organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in COPII-coated ER to Golgi transport vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum-Golgi intermediate compartment IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
VIP36-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Micropterus salmoides Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1485139v1 Primary Assembly

Genomic

  1. NW_024044459.1 Reference ASM1485139v1 Primary Assembly

    Range
    4822681..4831147 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038703476.1 → XP_038559404.1  VIP36-like protein isoform X1

    Conserved Domains (1) summary
    cl14058
    Location:56 → 303
    lectin_L-type; legume lectins

  2. XM_038703477.1 → XP_038559405.1  VIP36-like protein isoform X2

    Conserved Domains (1) summary
    cl14058
    Location:2 → 223
    lectin_L-type; legume lectins
Nucleotide Protein
Heading Accession and Version

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