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LOC119889110 beta-1,3-galactosyltransferase 2-like [ Micropterus salmoides (largemouth bass) ]

Gene ID: 119889110, updated on 7-Dec-2023

Summary

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Gene symbol
LOC119889110
Gene description
beta-1,3-galactosyltransferase 2-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Micropterus salmoides
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Centrarchiformes; Centrarchoidei; Centrarchidae; Micropterus
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Genomic context

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See LOC119889110 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
100 current ASM1485139v1 (GCF_014851395.1) Unplaced Scaffold NW_024044237.1 (9198651..9204522)

NW_024044237.1Genomic Context describing neighboring genes Neighboring gene centrosome and spindle pole associated protein 1-like Neighboring gene interleukin 1 receptor accessory protein-like 2 Neighboring gene misshapen-like kinase 1 Neighboring gene myotilin

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024044237 Unplaced Scaffold Reference ASM1485139v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,3-galactosyltransferase 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Micropterus salmoides Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1485139v1 Primary Assembly

Genomic

  1. NW_024044237.1 Reference ASM1485139v1 Primary Assembly

    Range
    9198651..9204522
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038699971.1 → XP_038555899.1  beta-1,3-galactosyltransferase 2-like isoform X2

    Conserved Domains (1) summary
    cl21608
    Location:104 → 297
    Galactosyl_T; Galactosyltransferase

  2. XM_038699972.1 → XP_038555900.1  beta-1,3-galactosyltransferase 2-like isoform X3

    Conserved Domains (1) summary
    cl21608
    Location:49 → 242
    Galactosyl_T; Galactosyltransferase

  3. XM_038699970.1 → XP_038555898.1  beta-1,3-galactosyltransferase 2-like isoform X1

    Conserved Domains (1) summary
    cl21608
    Location:131 → 324
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
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