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LOC119885415 carbohydrate sulfotransferase 12-like [ Micropterus salmoides (largemouth bass) ]

Gene ID: 119885415, updated on 7-Dec-2023

Summary

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Gene symbol
LOC119885415
Gene description
carbohydrate sulfotransferase 12-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Micropterus salmoides
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Centrarchiformes; Centrarchoidei; Centrarchidae; Micropterus
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Genomic context

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See LOC119885415 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
100 current ASM1485139v1 (GCF_014851395.1) Unplaced Scaffold NW_024040041.1 (10300185..10310123)

NW_024040041.1Genomic Context describing neighboring genes Neighboring gene interferon-induced very large GTPase 1-like Neighboring gene caspase recruitment domain-containing protein 11-like Neighboring gene C1q and TNF related 6a Neighboring gene interleukin 2 receptor, beta

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024040041 Unplaced Scaffold Reference ASM1485139v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Discovery and validation of gene-linked diagnostic SNP markers for assessing hybridization between Largemouth bass (Micropterus salmoides) and Florida bass (M. floridanus). Li C, et al. Mol Ecol Resour, 2015 Mar. PMID 25047482

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 12-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Micropterus salmoides Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1485139v1 Primary Assembly

Genomic

  1. NW_024040041.1 Reference ASM1485139v1 Primary Assembly

    Range
    10300185..10310123
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038695444.1 → XP_038551372.1  carbohydrate sulfotransferase 12-like

    Conserved Domains (1) summary
    pfam03567
    Location:161 → 406
    Sulfotransfer_2; Sulfotransferase family

  2. XM_038695451.1 → XP_038551379.1  carbohydrate sulfotransferase 12-like

    Conserved Domains (1) summary
    pfam03567
    Location:161 → 406
    Sulfotransfer_2; Sulfotransferase family
Nucleotide Protein
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