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sgcg sarcoglycan, gamma [ Micropterus salmoides (largemouth bass) ]

Gene ID: 119883045, updated on 21-Mar-2024

Summary

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Gene symbol
sgcg
Gene description
sarcoglycan, gamma
Gene type
protein coding
RefSeq status
MODEL
Organism
Micropterus salmoides
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Centrarchiformes; Centrarchoidei; Centrarchidae; Micropterus
Orthologs
human zebrafish all
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Genomic context

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See sgcg in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
100 current ASM1485139v1 (GCF_014851395.1) Unplaced Scaffold NW_024042261.1 (15702568..15717146)

NW_024042261.1Genomic Context describing neighboring genes Neighboring gene trafficking protein particle complex 4 Neighboring gene ribosomal protein S25 Neighboring gene sacsin molecular chaperone Neighboring gene tumor necrosis factor receptor superfamily, member 19

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024042261 Unplaced Scaffold Reference ASM1485139v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
gamma-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Micropterus salmoides Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1485139v1 Primary Assembly

Genomic

  1. NW_024042261.1 Reference ASM1485139v1 Primary Assembly

    Range
    15702568..15717146
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038693514.1 → XP_038549442.1  gamma-sarcoglycan

    Conserved Domains (1) summary
    pfam04790
    Location:26 → 279
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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