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hic1 hypermethylated in cancer 1 [ Micropterus salmoides (largemouth bass) ]

Gene ID: 119882438, updated on 21-Mar-2024

Summary

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Gene symbol
hic1
Gene description
hypermethylated in cancer 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Micropterus salmoides
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Centrarchiformes; Centrarchoidei; Centrarchidae; Micropterus
Orthologs
human zebrafish all
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Genomic context

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See hic1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
100 current ASM1485139v1 (GCF_014851395.1) Unplaced Scaffold NW_024042261.1 (28364350..28379982)

NW_024042261.1Genomic Context describing neighboring genes Neighboring gene TAO kinase 1a Neighboring gene TSR1 ribosome maturation factor Neighboring gene diphthamide biosynthesis 1 Neighboring gene reticulon 4 receptor-like 1b Neighboring gene uncharacterized LOC119883408

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024042261 Unplaced Scaffold Reference ASM1485139v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hypermethylated in cancer 1 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Micropterus salmoides Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1485139v1 Primary Assembly

Genomic

  1. NW_024042261.1 Reference ASM1485139v1 Primary Assembly

    Range
    28364350..28379982
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038692480.1 → XP_038548408.1  hypermethylated in cancer 1 protein isoform X1

    Conserved Domains (5) summary
    sd00017
    Location:583 → 603
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18333
    Location:38 → 160
    BTB_POZ_ZBTB29_HIC1; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in hypermethylated in cancer 1 protein (Hic-1)
    pfam00096
    Location:581 → 603
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:623 → 648
    zf-H2C2_2; Zinc-finger double domain
    cd20908
    Location:551 → 600
    SUF4-like; N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins

  2. XM_038692483.1 → XP_038548411.1  hypermethylated in cancer 1 protein isoform X4

    Conserved Domains (5) summary
    sd00017
    Location:552 → 572
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18333
    Location:7 → 129
    BTB_POZ_ZBTB29_HIC1; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in hypermethylated in cancer 1 protein (Hic-1)
    pfam00096
    Location:550 → 572
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:592 → 617
    zf-H2C2_2; Zinc-finger double domain
    cd20908
    Location:520 → 569
    SUF4-like; N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins

  3. XM_038692481.1 → XP_038548409.1  hypermethylated in cancer 1 protein isoform X2

    Conserved Domains (5) summary
    sd00017
    Location:575 → 595
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18333
    Location:30 → 152
    BTB_POZ_ZBTB29_HIC1; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in hypermethylated in cancer 1 protein (Hic-1)
    pfam00096
    Location:573 → 595
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:615 → 640
    zf-H2C2_2; Zinc-finger double domain
    cd20908
    Location:543 → 592
    SUF4-like; N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins

  4. XM_038692482.1 → XP_038548410.1  hypermethylated in cancer 1 protein isoform X3

    Conserved Domains (5) summary
    sd00017
    Location:565 → 585
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18333
    Location:20 → 142
    BTB_POZ_ZBTB29_HIC1; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in hypermethylated in cancer 1 protein (Hic-1)
    pfam00096
    Location:563 → 585
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:605 → 630
    zf-H2C2_2; Zinc-finger double domain
    cd20908
    Location:533 → 582
    SUF4-like; N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins
Nucleotide Protein
Heading Accession and Version

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