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SNX25 sorting nexin 25 [ Dermochelys coriacea (leatherback sea turtle) ]

Gene ID: 119854464, updated on 8-May-2024

Summary

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Gene symbol
SNX25
Gene description
sorting nexin 25
See related
EnsemblRapid:ENSDCOG00030000402
Gene type
protein coding
RefSeq status
MODEL
Organism
Dermochelys coriacea
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Dermochelyidae; Dermochelys
Orthologs
human mouse all
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Genomic context

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See SNX25 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
22
Annotation release Status Assembly Chr Location
101 current rDerCor1.pri.v4 (GCF_009764565.3) 4 NC_050071.1 (82600657..82780811)
100 previous assembly rDerCor1.pri.v3 (GCF_009764565.2) 4 NC_050071.1 (82600519..82780811)

Chromosome 4 - NC_050071.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 25 member 4 Neighboring gene cilia and flagella associated protein 97 Neighboring gene uncharacterized LOC119854466 Neighboring gene LRP2 binding protein Neighboring gene ankyrin repeat domain 37 Neighboring gene UFM1 specific peptidase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidylinositol binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in early endosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sorting nexin-25

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Dermochelys coriacea Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rDerCor1.pri.v4

Genomic

  1. NC_050071.1 Reference rDerCor1.pri.v4

    Range
    82600657..82780811
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038398924.2 → XP_038254852.1  sorting nexin-25 isoform X4

    Conserved Domains (4) summary
    cd06878
    Location:646 → 768
    PX_SNX25; The phosphoinositide binding Phox Homology domain of Sorting Nexin 25
    cd08720
    Location:489 → 597
    RGS_SNX25; Regulator of G protein signaling (RGS) domain found in the Sorting Nexin 25 (SNX25) protein
    pfam02194
    Location:178 → 353
    PXA; PXA domain
    pfam08628
    Location:845 → 951
    Nexin_C; Sorting nexin C terminal

  2. XM_038398923.2 → XP_038254851.1  sorting nexin-25 isoform X3

    Related
    ENSDCOP00030001244.1, ENSDCOT00030001306.1
    Conserved Domains (4) summary
    cd08720
    Location:489 → 597
    RGS_SNX25; Regulator of G protein signaling (RGS) domain found in the Sorting Nexin 25 (SNX25) protein
    pfam02194
    Location:178 → 353
    PXA; PXA domain
    pfam08628
    Location:850 → 956
    Nexin_C; Sorting nexin C terminal
    cl02563
    Location:698 → 773
    PX_domain; The Phox Homology domain, a phosphoinositide binding module

  3. XM_038398921.2 → XP_038254849.1  sorting nexin-25 isoform X1

    Related
    ENSDCOP00030001240.1, ENSDCOT00030001302.1
    Conserved Domains (4) summary
    cd06878
    Location:698 → 820
    PX_SNX25; The phosphoinositide binding Phox Homology domain of Sorting Nexin 25
    cd08720
    Location:489 → 597
    RGS_SNX25; Regulator of G protein signaling (RGS) domain found in the Sorting Nexin 25 (SNX25) protein
    pfam02194
    Location:178 → 353
    PXA; PXA domain
    pfam08628
    Location:897 → 1003
    Nexin_C; Sorting nexin C terminal

  4. XM_038398922.2 → XP_038254850.1  sorting nexin-25 isoform X2

    Related
    ENSDCOP00030001243.1, ENSDCOT00030001305.1
    Conserved Domains (4) summary
    cd06878
    Location:679 → 801
    PX_SNX25; The phosphoinositide binding Phox Homology domain of Sorting Nexin 25
    cd08720
    Location:470 → 578
    RGS_SNX25; Regulator of G protein signaling (RGS) domain found in the Sorting Nexin 25 (SNX25) protein
    pfam02194
    Location:178 → 334
    PXA; PXA domain
    pfam08628
    Location:878 → 984
    Nexin_C; Sorting nexin C terminal

  5. XM_038398925.2 → XP_038254853.1  sorting nexin-25 isoform X5

    Conserved Domains (4) summary
    cd06878
    Location:559 → 681
    PX_SNX25; The phosphoinositide binding Phox Homology domain of Sorting Nexin 25
    cd08720
    Location:350 → 458
    RGS_SNX25; Regulator of G protein signaling (RGS) domain found in the Sorting Nexin 25 (SNX25) protein
    pfam08628
    Location:758 → 864
    Nexin_C; Sorting nexin C terminal
    cl02564
    Location:177 → 306
    PXA; PXA domain

  6. XM_043513596.1 → XP_043369531.1  sorting nexin-25 isoform X6

    Related
    ENSDCOP00030001231.1, ENSDCOT00030001293.1
    Conserved Domains (3) summary
    cd06878
    Location:430 → 552
    PX_SNX25; The phosphoinositide binding Phox Homology domain of Sorting Nexin 25
    cl02564
    Location:16 → 84
    PXA; PXA domain
    cl02565
    Location:221 → 329
    RGS; Regulator of G protein signaling (RGS) domain superfamily
Nucleotide Protein
Heading Accession and Version

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