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HCFC1 host cell factor C1 [ Dermochelys coriacea (leatherback sea turtle) ]

Gene ID: 119847226, updated on 8-May-2024

Summary

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Gene symbol
HCFC1
Gene description
host cell factor C1
See related
EnsemblRapid:ENSDCOG00030018477
Gene type
protein coding
RefSeq status
MODEL
Organism
Dermochelys coriacea
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Dermochelyidae; Dermochelys
Orthologs
human mouse all
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Genomic context

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See HCFC1 in Genome Data Viewer
Location:
chromosome: 23
Exon count:
29
Annotation release Status Assembly Chr Location
101 current rDerCor1.pri.v4 (GCF_009764565.3) 23 NC_050090.1 (16781241..16799276, complement)
100 previous assembly rDerCor1.pri.v3 (GCF_009764565.2) 23 NC_050090.1 (16781241..16799276, complement)

Chromosome 23 - NC_050090.1Genomic Context describing neighboring genes Neighboring gene Rho GTPase activating protein 4 Neighboring gene renin binding protein Neighboring gene transmembrane protein 187 Neighboring gene interleukin 1 receptor associated kinase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone methyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: host cell factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Dermochelys coriacea Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rDerCor1.pri.v4

Genomic

  1. NC_050090.1 Reference rDerCor1.pri.v4

    Range
    16781241..16799276 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043501322.1 → XP_043357257.1  LOW QUALITY PROTEIN: host cell factor 1

    Related
    ENSDCOT00030054135.1
    Conserved Domains (6) summary
    PHA03255
    Location:704 → 842
    PHA03255; BDLF3; Provisional
    PLN02193
    Location:50 → 345
    PLN02193; nitrile-specifier protein
    PRK14951
    Location:1572 → 1671
    PRK14951; DNA polymerase III subunits gamma and tau; Provisional
    cd00063
    Location:1711 → 1754
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:223 → 276
    Kelch; KELCH repeat [structural motif]
    pfam05109
    Location:473 → 815
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
Nucleotide Protein
Heading Accession and Version

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