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LOC119836000 irregular chiasm C-roughest protein-like [ Zerene cesonia (dogface butterfly) ]

Gene ID: 119836000, updated on 7-Dec-2023

Summary

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Gene symbol
LOC119836000
Gene description
irregular chiasm C-roughest protein-like
See related
EnsemblRapid:ENSZCEG00000009715
Gene type
protein coding
RefSeq status
MODEL
Organism
Zerene cesonia
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Pieridae; Coliadinae; Zerene
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Genomic context

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See LOC119836000 in Genome Data Viewer
Location:
chromosome: 22
Exon count:
22
Annotation release Status Assembly Chr Location
100 current Zerene_cesonia_1.1 (GCF_012273895.1) 22 NC_052123.1 (2577599..2675031, complement)

Chromosome 22 - NC_052123.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119836051 Neighboring gene irregular chiasm C-roughest protein-like Neighboring gene ornithine decarboxylase 1-like Neighboring gene irregular chiasm C-roughest protein-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_052123.1 Chromosome 22 Reference Zerene_cesonia_1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
irregular chiasm C-roughest protein-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Zerene cesonia Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zerene_cesonia_1.1

Genomic

  1. NC_052123.1 Reference Zerene_cesonia_1.1

    Range
    2577599..2675031 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038361159.1 → XP_038217087.1  irregular chiasm C-roughest protein-like isoform X2

    Conserved Domains (4) summary
    smart00410
    Location:42 → 136
    IG_like; Immunoglobulin like
    pfam13927
    Location:415 → 499
    Ig_3; Immunoglobulin domain
    cd00096
    Location:263 → 323
    Ig; Immunoglobulin domain
    cl11960
    Location:140 → 233
    Ig; Immunoglobulin domain

  2. XM_038361158.1 → XP_038217086.1  irregular chiasm C-roughest protein-like isoform X1

    Related
    ENSZCEP00000014629.1, ENSZCET00000016100.1
    Conserved Domains (4) summary
    smart00410
    Location:42 → 136
    IG_like; Immunoglobulin like
    pfam13927
    Location:415 → 499
    Ig_3; Immunoglobulin domain
    cd00096
    Location:263 → 323
    Ig; Immunoglobulin domain
    cl11960
    Location:140 → 233
    Ig; Immunoglobulin domain
Nucleotide Protein
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