U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Pigm phosphatidylinositol glycan anchor biosynthesis class M [ Arvicola amphibius (Eurasian water vole) ]

Gene ID: 119827543, updated on 21-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
Pigm
Gene description
phosphatidylinositol glycan anchor biosynthesis class M
Gene type
protein coding
RefSeq status
MODEL
Organism
Arvicola amphibius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Arvicolinae; Arvicola
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Pigm in Genome Data Viewer
Location:
chromosome: 12
Exon count:
1
Annotation release Status Assembly Chr Location
101 current mArvAmp1.2 (GCF_903992535.2) 12 NC_052058.2 (21539482..21541441, complement)
100 previous assembly mArvAmp1.1 (GCF_903992535.1) 12 NC_052058.1 (21539482..21541441, complement)

Chromosome 12 - NC_052058.2Genomic Context describing neighboring genes Neighboring gene SLAM family member 9 Neighboring gene FK506-binding protein-like Neighboring gene potassium inwardly rectifying channel subfamily J member 10 Neighboring gene potassium inwardly rectifying channel subfamily J member 9

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,4-mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables glycolipid mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in GPI anchor biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of glycosylphosphatidylinositol-mannosyltransferase I complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
GPI mannosyltransferase 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Arvicola amphibius Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mArvAmp1.2

Genomic

  1. NC_052058.2 Reference mArvAmp1.2

    Range
    21539482..21541441 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038349307.1 → XP_038205235.1  GPI mannosyltransferase 1

    Conserved Domains (1) summary
    pfam05007
    Location:140 → 408
    Mannosyl_trans; Mannosyltransferase (PIG-M)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.