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Plod3 procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 [ Arvicola amphibius (Eurasian water vole) ]

Gene ID: 119824992, updated on 21-Mar-2024

Summary

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Gene symbol
Plod3
Gene description
procollagen-lysine,2-oxoglutarate 5-dioxygenase 3
See related
EnsemblRapid:ENSAAPG00005023382
Gene type
protein coding
RefSeq status
MODEL
Organism
Arvicola amphibius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Arvicolinae; Arvicola
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 10
Exon count:
19
Annotation release Status Assembly Chr Location
101 current mArvAmp1.2 (GCF_903992535.2) 10 NC_052056.1 (95143014..95153370)
100 previous assembly mArvAmp1.1 (GCF_903992535.1) 10 NC_052056.1 (95143014..95153378)

Chromosome 10 - NC_052056.1Genomic Context describing neighboring genes Neighboring gene fission, mitochondrial 1 Neighboring gene claudin 15 Neighboring gene zinc finger HIT-type containing 1 Neighboring gene 2-acylglycerol O-acyltransferase 2-A-like Neighboring gene monoacylglycerol O-acyltransferase 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-ascorbic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables procollagen glucosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables procollagen-lysine 5-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-lysine hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arvicola amphibius Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mArvAmp1.2

Genomic

  1. NC_052056.1 Reference mArvAmp1.2

    Range
    95143014..95153370
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038345587.2 → XP_038201515.1  multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3

    Related
    ENSAAPP00005029959.1, ENSAAPT00005033022.2
    Conserved Domains (2) summary
    smart00702
    Location:576 → 739
    P4Hc; Prolyl 4-hydroxylase alpha subunit homologues
    pfam13641
    Location:298 → 443
    Glyco_tranf_2_3; Glycosyltransferase like family 2
Nucleotide Protein
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Gene LinkOut

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