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Pde9a phosphodiesterase 9A [ Arvicola amphibius (Eurasian water vole) ]

Gene ID: 119822929, updated on 21-Mar-2024

Summary

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Gene symbol
Pde9a
Gene description
phosphodiesterase 9A
See related
EnsemblRapid:ENSAAPG00005022763
Gene type
protein coding
RefSeq status
MODEL
Organism
Arvicola amphibius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Arvicolinae; Arvicola
Orthologs
human mouse all
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Genomic context

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See Pde9a in Genome Data Viewer
Location:
chromosome: 9
Exon count:
22
Annotation release Status Assembly Chr Location
101 current mArvAmp1.2 (GCF_903992535.2) 9 NC_052055.2 (118656410..118745504, complement)
100 previous assembly mArvAmp1.1 (GCF_903992535.1) 9 NC_052055.1 (118656410..118745504, complement)

Chromosome 9 - NC_052055.2Genomic Context describing neighboring genes Neighboring gene NADH:ubiquinone oxidoreductase subunit V3 Neighboring gene WD repeat domain 4 Neighboring gene solute carrier family 37 member 1 Neighboring gene radial spoke head component 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3',5'-cyclic-GMP phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cGMP catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cGMP-mediated signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arvicola amphibius Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mArvAmp1.2

Genomic

  1. NC_052055.2 Reference mArvAmp1.2

    Range
    118656410..118745504 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038342593.1 → XP_038198521.1  high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A isoform X1

    Related
    ENSAAPP00005029153.1, ENSAAPT00005032138.2
    Conserved Domains (1) summary
    pfam00233
    Location:250 → 478
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase

  2. XM_038342594.2 → XP_038198522.1  high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A isoform X1

    Conserved Domains (1) summary
    pfam00233
    Location:250 → 478
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase

  3. XM_038342597.1 → XP_038198525.1  high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A isoform X3

    Related
    ENSAAPP00005029188.1, ENSAAPT00005032177.2
    Conserved Domains (1) summary
    pfam00233
    Location:103 → 331
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase

  4. XM_038342598.1 → XP_038198526.1  high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A isoform X3

    Conserved Domains (1) summary
    pfam00233
    Location:103 → 331
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase

  5. XM_038342596.1 → XP_038198524.1  high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A isoform X2

    Related
    ENSAAPP00005029169.2, ENSAAPT00005032156.2
    Conserved Domains (1) summary
    pfam00233
    Location:128 → 356
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase

  6. XM_038342595.2 → XP_038198523.1  high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A isoform X1

    Conserved Domains (1) summary
    pfam00233
    Location:250 → 478
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
Nucleotide Protein
Heading Accession and Version

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