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Chpf chondroitin polymerizing factor [ Arvicola amphibius (Eurasian water vole) ]

Gene ID: 119821531, updated on 21-Mar-2024

Summary

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Gene symbol
Chpf
Gene description
chondroitin polymerizing factor
See related
EnsemblRapid:ENSAAPG00005012140
Gene type
protein coding
RefSeq status
MODEL
Organism
Arvicola amphibius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Arvicolinae; Arvicola
Orthologs
human mouse all
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Genomic context

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See Chpf in Genome Data Viewer
Location:
chromosome: 8
Exon count:
4
Annotation release Status Assembly Chr Location
101 current mArvAmp1.2 (GCF_903992535.2) 8 NC_052054.1 (116012602..116017392)
100 previous assembly mArvAmp1.1 (GCF_903992535.1) 8 NC_052054.1 (116012602..116017392)

Chromosome 8 - NC_052054.1Genomic Context describing neighboring genes Neighboring gene inhibin subunit alpha Neighboring gene obscurin like cytoskeletal adaptor 1 Neighboring gene transmembrane protein 198 Neighboring gene acid sensing ion channel subunit family member 4 Neighboring gene GDP-mannose pyrophosphorylase A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate synthase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arvicola amphibius Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mArvAmp1.2

Genomic

  1. NC_052054.1 Reference mArvAmp1.2

    Range
    116012602..116017392
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038340610.1 → XP_038196538.1  chondroitin sulfate synthase 2

    Related
    ENSAAPP00005015552.1, ENSAAPT00005017046.2
    Conserved Domains (2) summary
    pfam05679
    Location:262 → 761
    CHGN; Chondroitin N-acetylgalactosaminyltransferase
    cl21608
    Location:194 → 283
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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