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Galnt13 polypeptide N-acetylgalactosaminyltransferase 13 [ Arvicola amphibius (Eurasian water vole) ]

Gene ID: 119820009, updated on 21-Mar-2024

Summary

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Gene symbol
Galnt13
Gene description
polypeptide N-acetylgalactosaminyltransferase 13
See related
EnsemblRapid:ENSAAPG00005011311
Gene type
protein coding
RefSeq status
MODEL
Organism
Arvicola amphibius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Arvicolinae; Arvicola
Orthologs
human mouse all
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Genomic context

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See Galnt13 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
13
Annotation release Status Assembly Chr Location
101 current mArvAmp1.2 (GCF_903992535.2) 7 NC_052053.1 (27029130..27520488, complement)
100 previous assembly mArvAmp1.1 (GCF_903992535.1) 7 NC_052053.1 (27029130..27520488, complement)

Chromosome 7 - NC_052053.1Genomic Context describing neighboring genes Neighboring gene ubiquitin-conjugating enzyme E2 K-like Neighboring gene potassium inwardly rectifying channel subfamily J member 3 Neighboring gene 10 kDa heat shock protein, mitochondrial-like Neighboring gene U2 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 13

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arvicola amphibius Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mArvAmp1.2

Genomic

  1. NC_052053.1 Reference mArvAmp1.2

    Range
    27029130..27520488 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038338251.1 → XP_038194179.1  polypeptide N-acetylgalactosaminyltransferase 13 isoform X1

    Conserved Domains (2) summary
    cd02510
    Location:118 → 418
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:431 → 547
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  2. XM_038338252.1 → XP_038194180.1  polypeptide N-acetylgalactosaminyltransferase 13 isoform X2

    Related
    ENSAAPP00005032848.1, ENSAAPT00005037279.1
    Conserved Domains (2) summary
    cd02510
    Location:118 → 418
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:434 → 514
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  3. XM_038338250.1 → XP_038194178.1  polypeptide N-acetylgalactosaminyltransferase 13 isoform X1

    Related
    ENSAAPP00005034775.1, ENSAAPT00005040203.1
    Conserved Domains (2) summary
    cd02510
    Location:118 → 418
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:431 → 547
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
Nucleotide Protein
Heading Accession and Version

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