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Gbgt1 globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 (FORS blood group) [ Arvicola amphibius (Eurasian water vole) ]

Gene ID: 119819957, updated on 21-Mar-2024

Summary

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Gene symbol
Gbgt1
Gene description
globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 (FORS blood group)
See related
EnsemblRapid:ENSAAPG00005018254
Gene type
protein coding
RefSeq status
MODEL
Organism
Arvicola amphibius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Arvicolinae; Arvicola
Orthologs
human mouse all
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Genomic context

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See Gbgt1 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
10
Annotation release Status Assembly Chr Location
101 current mArvAmp1.2 (GCF_903992535.2) 7 NC_052053.1 (46343905..46353456)
100 previous assembly mArvAmp1.1 (GCF_903992535.1) 7 NC_052053.1 (46343905..46353456)

Chromosome 7 - NC_052053.1Genomic Context describing neighboring genes Neighboring gene mitochondrial ribosomal protein S2 Neighboring gene protein FAM234B-like Neighboring gene ral guanine nucleotide dissociation stimulator Neighboring gene 60S ribosomal protein L30-like Neighboring gene carboxyl ester lipase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables globoside alpha-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
globoside alpha-1,3-N-acetylgalactosaminyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arvicola amphibius Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mArvAmp1.2

Genomic

  1. NC_052053.1 Reference mArvAmp1.2

    Range
    46343905..46353456
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038338166.1 → XP_038194094.1  globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 isoform X1

    Conserved Domains (1) summary
    pfam03414
    Location:59 → 346
    Glyco_transf_6; Glycosyltransferase family 6

  2. XM_038338167.1 → XP_038194095.1  globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 isoform X1

    Related
    ENSAAPP00005023422.1, ENSAAPT00005025724.2
    Conserved Domains (1) summary
    pfam03414
    Location:59 → 346
    Glyco_transf_6; Glycosyltransferase family 6

  3. XM_038338168.1 → XP_038194096.1  globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 isoform X1

    Conserved Domains (1) summary
    pfam03414
    Location:59 → 346
    Glyco_transf_6; Glycosyltransferase family 6

  4. XM_038338169.1 → XP_038194097.1  globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 isoform X2

    Conserved Domains (1) summary
    pfam03414
    Location:13 → 300
    Glyco_transf_6; Glycosyltransferase family 6
Nucleotide Protein
Heading Accession and Version

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