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Chst1 carbohydrate sulfotransferase 1 [ Arvicola amphibius (Eurasian water vole) ]

Gene ID: 119814916, updated on 21-Mar-2024

Summary

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Gene symbol
Chst1
Gene description
carbohydrate sulfotransferase 1
See related
EnsemblRapid:ENSAAPG00005009081
Gene type
protein coding
RefSeq status
MODEL
Organism
Arvicola amphibius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Arvicolinae; Arvicola
Orthologs
human mouse all
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Genomic context

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See Chst1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
4
Annotation release Status Assembly Chr Location
101 current mArvAmp1.2 (GCF_903992535.2) 5 NC_052051.1 (82699592..82714033, complement)
100 previous assembly mArvAmp1.1 (GCF_903992535.1) 5 NC_052051.1 (82699592..82714033, complement)

Chromosome 5 - NC_052051.1Genomic Context describing neighboring genes Neighboring gene PR/SET domain 11 Neighboring gene synaptotagmin 13 Neighboring gene solute carrier family 35 member C1 Neighboring gene cryptochrome circadian regulator 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables N-acetylglucosamine 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables keratan sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acetylglucosamine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in keratan sulfate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arvicola amphibius Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mArvAmp1.2

Genomic

  1. NC_052051.1 Reference mArvAmp1.2

    Range
    82699592..82714033 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038331012.1 → XP_038186940.1  carbohydrate sulfotransferase 1

    Related
    ENSAAPP00005011768.1, ENSAAPT00005012890.2
    Conserved Domains (1) summary
    pfam00685
    Location:200 → 384
    Sulfotransfer_1; Sulfotransferase domain
Nucleotide Protein
Heading Accession and Version

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