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Ndst1 N-deacetylase and N-sulfotransferase 1 [ Arvicola amphibius (Eurasian water vole) ]

Gene ID: 119814042, updated on 21-Mar-2024

Summary

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Gene symbol
Ndst1
Gene description
N-deacetylase and N-sulfotransferase 1
See related
EnsemblRapid:ENSAAPG00005013875
Gene type
protein coding
RefSeq status
MODEL
Organism
Arvicola amphibius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Arvicolinae; Arvicola
Orthologs
human mouse all
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Genomic context

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See Ndst1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
18
Annotation release Status Assembly Chr Location
101 current mArvAmp1.2 (GCF_903992535.2) 5 NC_052051.1 (135190938..135253979, complement)
100 previous assembly mArvAmp1.1 (GCF_903992535.1) 5 NC_052051.1 (135190938..135253979, complement)

Chromosome 5 - NC_052051.1Genomic Context describing neighboring genes Neighboring gene myozenin 3 Neighboring gene synaptopodin Neighboring gene ribosomal protein S14 Neighboring gene CD74 molecule

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine N-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arvicola amphibius Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mArvAmp1.2

Genomic

  1. NC_052051.1 Reference mArvAmp1.2

    Range
    135190938..135253979 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038329294.1 → XP_038185222.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1 isoform X1

    Related
    ENSAAPP00005017818.2, ENSAAPT00005019508.2
    Conserved Domains (2) summary
    pfam00685
    Location:605 → 855
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:30 → 515
    HSNSD; heparan sulfate-N-deacetylase

  2. XM_038329292.1 → XP_038185220.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1 isoform X1

    Conserved Domains (2) summary
    pfam00685
    Location:605 → 855
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:30 → 515
    HSNSD; heparan sulfate-N-deacetylase

  3. XM_038329291.1 → XP_038185219.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1 isoform X1

    Conserved Domains (2) summary
    pfam00685
    Location:605 → 855
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:30 → 515
    HSNSD; heparan sulfate-N-deacetylase

  4. XM_038329293.1 → XP_038185221.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1 isoform X1

    Conserved Domains (2) summary
    pfam00685
    Location:605 → 855
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:30 → 515
    HSNSD; heparan sulfate-N-deacetylase

  5. XM_038329295.1 → XP_038185223.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1 isoform X2

    Conserved Domains (2) summary
    pfam00685
    Location:181 → 431
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:1 → 91
    HSNSD; heparan sulfate-N-deacetylase
Nucleotide Protein
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