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Xylt2 xylosyltransferase 2 [ Arvicola amphibius (Eurasian water vole) ]

Gene ID: 119813275, updated on 21-Mar-2024

Summary

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Gene symbol
Xylt2
Gene description
xylosyltransferase 2
See related
EnsemblRapid:ENSAAPG00005003343
Gene type
protein coding
RefSeq status
MODEL
Organism
Arvicola amphibius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Arvicolinae; Arvicola
Orthologs
human mouse all
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Genomic context

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See Xylt2 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
11
Annotation release Status Assembly Chr Location
101 current mArvAmp1.2 (GCF_903992535.2) 4 NC_052050.1 (26834170..26846555)
100 previous assembly mArvAmp1.1 (GCF_903992535.1) 4 NC_052050.1 (26834170..26846562)

Chromosome 4 - NC_052050.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L27a-like Neighboring gene 40S ribosomal protein S14-like Neighboring gene mitochondrial ribosomal protein L27 Neighboring gene essential meiotic structure-specific endonuclease 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heparan sulfate proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
xylosyltransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arvicola amphibius Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mArvAmp1.2

Genomic

  1. NC_052050.1 Reference mArvAmp1.2

    Range
    26834170..26846555
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038328490.2 → XP_038184418.1  xylosyltransferase 2

    Related
    ENSAAPP00005004299.1, ENSAAPT00005004704.2
    Conserved Domains (2) summary
    pfam02485
    Location:234 → 486
    Branch; Core-2/I-Branching enzyme
    pfam12529
    Location:519 → 699
    Xylo_C; Xylosyltransferase C terminal
Nucleotide Protein
Heading Accession and Version

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