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Kirrel3 kirre like nephrin family adhesion molecule 3 [ Arvicola amphibius (Eurasian water vole) ]

Gene ID: 119809308, updated on 21-Mar-2024

Summary

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Gene symbol
Kirrel3
Gene description
kirre like nephrin family adhesion molecule 3
See related
EnsemblRapid:ENSAAPG00005010274
Gene type
protein coding
RefSeq status
MODEL
Organism
Arvicola amphibius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Arvicolinae; Arvicola
Orthologs
human mouse all
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Genomic context

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See Kirrel3 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
17
Annotation release Status Assembly Chr Location
101 current mArvAmp1.2 (GCF_903992535.2) 3 NC_052049.1 (103152493..103280871)
100 previous assembly mArvAmp1.1 (GCF_903992535.1) 3 NC_052049.1 (103089523..103280871)

Chromosome 3 - NC_052049.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L9-like Neighboring gene uncharacterized LOC121677129 Neighboring gene ST3 beta-galactoside alpha-2,3-sialyltransferase 4 Neighboring gene decapping enzyme, scavenger

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synapse assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
kin of IRRE-like protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arvicola amphibius Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mArvAmp1.2

Genomic

  1. NC_052049.1 Reference mArvAmp1.2

    Range
    103152493..103280871
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042054703.1 → XP_041910637.1  kin of IRRE-like protein 3

    Related
    ENSAAPP00005013340.1, ENSAAPT00005014615.1
    Conserved Domains (3) summary
    smart00409
    Location:354 → 429
    IG; Immunoglobulin
    cd05758
    Location:431 → 528
    IgI_5_KIRREL3-like; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
    cl11960
    Location:176 → 246
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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