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Csgalnact2 chondroitin sulfate N-acetylgalactosaminyltransferase 2 [ Arvicola amphibius (Eurasian water vole) ]

Gene ID: 119807926, updated on 21-Mar-2024

Summary

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Gene symbol
Csgalnact2
Gene description
chondroitin sulfate N-acetylgalactosaminyltransferase 2
See related
EnsemblRapid:ENSAAPG00005009095
Gene type
protein coding
RefSeq status
MODEL
Organism
Arvicola amphibius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Arvicolinae; Arvicola
Orthologs
human mouse all
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Genomic context

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See Csgalnact2 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
10
Annotation release Status Assembly Chr Location
101 current mArvAmp1.2 (GCF_903992535.2) 2 NC_052048.2 (29951693..29991678)
100 previous assembly mArvAmp1.1 (GCF_903992535.1) 2 NC_052048.1 (29951693..29991245)

Chromosome 2 - NC_052048.2Genomic Context describing neighboring genes Neighboring gene rRNA-processing protein FCF1 homolog Neighboring gene BMS1 ribosome biogenesis factor Neighboring gene ret proto-oncogene Neighboring gene RasGEF domain family member 1A Neighboring gene heterogeneous nuclear ribonucleoprotein F

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate N-acetylgalactosaminyltransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arvicola amphibius Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mArvAmp1.2

Genomic

  1. NC_052048.2 Reference mArvAmp1.2

    Range
    29951693..29991678
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038320153.2 → XP_038176081.1  chondroitin sulfate N-acetylgalactosaminyltransferase 2

    Conserved Domains (1) summary
    cl11394
    Location:75 → 516
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  2. XM_038320154.2 → XP_038176082.1  chondroitin sulfate N-acetylgalactosaminyltransferase 2

    Related
    ENSAAPP00005011781.1, ENSAAPT00005012906.2
    Conserved Domains (1) summary
    cl11394
    Location:75 → 516
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  3. XM_038320155.2 → XP_038176083.1  chondroitin sulfate N-acetylgalactosaminyltransferase 2

    Conserved Domains (1) summary
    cl11394
    Location:75 → 516
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
Heading Accession and Version

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