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Rab3ip RAB3A interacting protein [ Arvicola amphibius (Eurasian water vole) ]

Gene ID: 119803248, updated on 21-Mar-2024

Summary

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Gene symbol
Rab3ip
Gene description
RAB3A interacting protein
See related
EnsemblRapid:ENSAAPG00005021757
Gene type
protein coding
RefSeq status
MODEL
Organism
Arvicola amphibius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Arvicolinae; Arvicola
Orthologs
human mouse all
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Genomic context

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See Rab3ip in Genome Data Viewer
Location:
chromosome: 17
Exon count:
14
Annotation release Status Assembly Chr Location
101 current mArvAmp1.2 (GCF_903992535.2) 17 NC_052063.2 (29848681..29898322, complement)
100 previous assembly mArvAmp1.1 (GCF_903992535.1) 17 NC_052063.1 (5544229..5593887, complement)

Chromosome 17 - NC_052063.2Genomic Context describing neighboring genes Neighboring gene CCR4-NOT transcription complex subunit 2 Neighboring gene myelin regulatory factor like Neighboring gene bestrophin 3 Neighboring gene leucine rich repeat containing 10

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables guanyl-nucleotide exchange factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in exocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi to plasma membrane transport vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
rab-3A-interacting protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arvicola amphibius Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mArvAmp1.2

Genomic

  1. NC_052063.2 Reference mArvAmp1.2

    Range
    29848681..29898322 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038314417.2 → XP_038170345.1  rab-3A-interacting protein isoform X1

    Conserved Domains (3) summary
    COG4372
    Location:104 → 240
    COG4372; Uncharacterized conserved protein, contains DUF3084 domain [Function unknown]
    pfam06428
    Location:173 → 241
    Sec2p; GDP/GTP exchange factor Sec2p
    cd21068
    Location:266 → 458
    Rab11BD_RAB3IP; Rab11 binding domain of Rab-3A-interacting protein (RAB3IP)

  2. XM_038314415.2 → XP_038170343.1  rab-3A-interacting protein isoform X1

    Conserved Domains (3) summary
    COG4372
    Location:104 → 240
    COG4372; Uncharacterized conserved protein, contains DUF3084 domain [Function unknown]
    pfam06428
    Location:173 → 241
    Sec2p; GDP/GTP exchange factor Sec2p
    cd21068
    Location:266 → 458
    Rab11BD_RAB3IP; Rab11 binding domain of Rab-3A-interacting protein (RAB3IP)

  3. XM_038314416.2 → XP_038170344.1  rab-3A-interacting protein isoform X1

    Related
    ENSAAPP00005027859.1, ENSAAPT00005030689.2
    Conserved Domains (3) summary
    COG4372
    Location:104 → 240
    COG4372; Uncharacterized conserved protein, contains DUF3084 domain [Function unknown]
    pfam06428
    Location:173 → 241
    Sec2p; GDP/GTP exchange factor Sec2p
    cd21068
    Location:266 → 458
    Rab11BD_RAB3IP; Rab11 binding domain of Rab-3A-interacting protein (RAB3IP)

  4. XM_038314418.2 → XP_038170346.1  rab-3A-interacting protein isoform X2

    Conserved Domains (1) summary
    cd21068
    Location:60 → 252
    Rab11BD_RAB3IP; Rab11 binding domain of Rab-3A-interacting protein (RAB3IP)
Nucleotide Protein
Heading Accession and Version

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