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Ndst3 N-deacetylase and N-sulfotransferase 3 [ Arvicola amphibius (Eurasian water vole) ]

Gene ID: 119801084, updated on 21-Mar-2024

Summary

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Gene symbol
Ndst3
Gene description
N-deacetylase and N-sulfotransferase 3
See related
EnsemblRapid:ENSAAPG00005014494
Gene type
protein coding
RefSeq status
MODEL
Organism
Arvicola amphibius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Arvicolinae; Arvicola
Orthologs
human all
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Genomic context

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See Ndst3 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
13
Annotation release Status Assembly Chr Location
101 current mArvAmp1.2 (GCF_903992535.2) 14 NC_052060.1 (32409250..32525751, complement)
100 previous assembly mArvAmp1.1 (GCF_903992535.1) 14 NC_052060.1 (32409250..32525751, complement)

Chromosome 14 - NC_052060.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119801440 Neighboring gene small nucleolar RNA SNORA24 Neighboring gene serine protease 12 Neighboring gene translocation associated membrane protein 1 like 1 Neighboring gene N-deacetylase and N-sulfotransferase 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine N-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arvicola amphibius Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mArvAmp1.2

Genomic

  1. NC_052060.1 Reference mArvAmp1.2

    Range
    32409250..32525751 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038311542.1 → XP_038167470.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 3

    Related
    ENSAAPP00005018642.1, ENSAAPT00005020404.1
    Conserved Domains (2) summary
    pfam00685
    Location:595 → 846
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:20 → 506
    HSNSD; heparan sulfate-N-deacetylase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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