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si:ch211-236h17.3 carbohydrate sulfotransferase 11 [ Cyprinodon tularosa ]

Gene ID: 119795497, updated on 21-Mar-2024

Summary

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Gene symbol
si:ch211-236h17.3
Gene description
carbohydrate sulfotransferase 11
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyprinodon tularosa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Cyprinodontidae; Cyprinodon
Orthologs
zebrafish all
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Genomic context

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See si:ch211-236h17.3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
100 current ASM1607723v1 (GCF_016077235.1) Unplaced Scaffold NW_024039244.1 (106944..133307, complement)

NW_024039244.1Genomic Context describing neighboring genes Neighboring gene protein phosphatase 1 regulatory subunit 3D-like Neighboring gene solute carrier family 41 member 1-like Neighboring gene thioredoxin reductase 3 Neighboring gene uncharacterized si:ch1073-456m8.1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024039244 Unplaced Scaffold Reference ASM1607723v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 11

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyprinodon tularosa Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1607723v1

Genomic

  1. NW_024039244.1 Reference ASM1607723v1

    Range
    106944..133307 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038303533.1 → XP_038159461.1  carbohydrate sulfotransferase 11

    Conserved Domains (1) summary
    pfam03567
    Location:97 → 328
    Sulfotransfer_2; Sulfotransferase family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases