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hcfc1b host cell factor C1b [ Cyprinodon tularosa ]

Gene ID: 119792004, updated on 21-Mar-2024

Summary

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Gene symbol
hcfc1b
Gene description
host cell factor C1b
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyprinodon tularosa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Cyprinodontidae; Cyprinodon
Orthologs
zebrafish all
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Genomic context

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See hcfc1b in Genome Data Viewer
Location:
chromosome: Un
Exon count:
29
Annotation release Status Assembly Chr Location
100 current ASM1607723v1 (GCF_016077235.1) Unplaced Scaffold NW_024039127.1 (937265..959365, complement)

NW_024039127.1Genomic Context describing neighboring genes Neighboring gene ATP-binding cassette, sub-family D (ALD), member 1 Neighboring gene coiled-coil domain containing 120a Neighboring gene interleukin-1 receptor-associated kinase 1 Neighboring gene methyl CpG binding protein 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024039127 Unplaced Scaffold Reference ASM1607723v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone methyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
host cell factor 1b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyprinodon tularosa Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1607723v1

Genomic

  1. NW_024039127.1 Reference ASM1607723v1

    Range
    937265..959365 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038298427.1 → XP_038154355.1  host cell factor 1b

    Conserved Domains (5) summary
    PLN02193
    Location:3 → 316
    PLN02193; nitrile-specifier protein
    cd00063
    Location:1229 → 1292
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:196 → 247
    Kelch; KELCH repeat [structural motif]
    pfam05109
    Location:608 → 843
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    pfam13854
    Location:313 → 345
    Kelch_5; Kelch motif
Nucleotide Protein
Heading Accession and Version

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