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sgcd sarcoglycan, delta (dystrophin-associated glycoprotein) [ Cyprinodon tularosa ]

Gene ID: 119790290, updated on 21-Mar-2024

Summary

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Gene symbol
sgcd
Gene description
sarcoglycan, delta (dystrophin-associated glycoprotein)
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyprinodon tularosa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Cyprinodontidae; Cyprinodon
Orthologs
human zebrafish all
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Genomic context

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See sgcd in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
100 current ASM1607723v1 (GCF_016077235.1) Unplaced Scaffold NW_024039074.1 (833188..1210041)

NW_024039074.1Genomic Context describing neighboring genes Neighboring gene 5.8S ribosomal RNA Neighboring gene mitochondrial ribosomal protein L22 Neighboring gene uncharacterized LOC119790283 Neighboring gene rho GTPase-activating protein 7 Neighboring gene uncharacterized LOC119790311 Neighboring gene arginyl-tRNA synthetase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024039074 Unplaced Scaffold Reference ASM1607723v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
delta-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyprinodon tularosa Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1607723v1

Genomic

  1. NW_024039074.1 Reference ASM1607723v1

    Range
    833188..1210041
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038295797.1 → XP_038151725.1  delta-sarcoglycan isoform X2

    Conserved Domains (1) summary
    pfam04790
    Location:22 → 280
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  2. XM_038295796.1 → XP_038151724.1  delta-sarcoglycan isoform X1

    Conserved Domains (1) summary
    pfam04790
    Location:23 → 281
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein
Heading Accession and Version

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