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ATF7IP activating transcription factor 7 interacting protein [ Motacilla alba alba ]

Gene ID: 119708588, updated on 3-Aug-2024

Summary

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Gene symbol
ATF7IP
Gene description
activating transcription factor 7 interacting protein
Gene type
protein coding
RefSeq status
MODEL
Organism
Motacilla alba alba (sub-species: alba)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Motacillidae; Motacilla
Orthologs
human mouse all
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Genomic context

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See ATF7IP in Genome Data Viewer
Location:
chromosome: 1A
Exon count:
23
Annotation release Status Assembly Chr Location
100 current Motacilla_alba_V1.0_pri (GCF_015832195.1) 1A NC_052031.1 (47500818..47580367)

Chromosome 1A - NC_052031.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119708841 Neighboring gene uncharacterized LOC119708535 Neighboring gene phospholipase B domain containing 1 Neighboring gene uncharacterized LOC119708593 Neighboring gene guanylate cyclase 2C

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_052031.1 Chromosome 1A Reference Motacilla_alba_V1.0_pri Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coregulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA integration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in DNA recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of DNA methylation-dependent heterochromatin formation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
activating transcription factor 7-interacting protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Motacilla alba alba Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Motacilla_alba_V1.0_pri Primary Assembly

Genomic

  1. NC_052031.1 Reference Motacilla_alba_V1.0_pri Primary Assembly

    Range
    47500818..47580367
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038155150.1 → XP_038011078.1  activating transcription factor 7-interacting protein 1 isoform X5

    Conserved Domains (3) summary
    pfam05109
    Location:493 → 774
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    pfam16788
    Location:392 → 603
    ATF7IP_BD; ATF-interacting protein binding domain
    cl00213
    Location:950 → 1088
    DNA_BRE_C; DNA breaking-rejoining enzymes, C-terminal catalytic domain

  2. XM_038155153.1 → XP_038011081.1  activating transcription factor 7-interacting protein 1 isoform X5

    Conserved Domains (3) summary
    pfam05109
    Location:493 → 774
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    pfam16788
    Location:392 → 603
    ATF7IP_BD; ATF-interacting protein binding domain
    cl00213
    Location:950 → 1088
    DNA_BRE_C; DNA breaking-rejoining enzymes, C-terminal catalytic domain

  3. XM_038155147.1 → XP_038011075.1  activating transcription factor 7-interacting protein 1 isoform X5

    Conserved Domains (3) summary
    pfam05109
    Location:493 → 774
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    pfam16788
    Location:392 → 603
    ATF7IP_BD; ATF-interacting protein binding domain
    cl00213
    Location:950 → 1088
    DNA_BRE_C; DNA breaking-rejoining enzymes, C-terminal catalytic domain

  4. XM_038155156.1 → XP_038011084.1  activating transcription factor 7-interacting protein 1 isoform X5

    Conserved Domains (3) summary
    pfam05109
    Location:493 → 774
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    pfam16788
    Location:392 → 603
    ATF7IP_BD; ATF-interacting protein binding domain
    cl00213
    Location:950 → 1088
    DNA_BRE_C; DNA breaking-rejoining enzymes, C-terminal catalytic domain

  5. XM_038155151.1 → XP_038011079.1  activating transcription factor 7-interacting protein 1 isoform X5

    Conserved Domains (3) summary
    pfam05109
    Location:493 → 774
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    pfam16788
    Location:392 → 603
    ATF7IP_BD; ATF-interacting protein binding domain
    cl00213
    Location:950 → 1088
    DNA_BRE_C; DNA breaking-rejoining enzymes, C-terminal catalytic domain

  6. XM_038155158.1 → XP_038011086.1  activating transcription factor 7-interacting protein 1 isoform X5

    Conserved Domains (3) summary
    pfam05109
    Location:493 → 774
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    pfam16788
    Location:392 → 603
    ATF7IP_BD; ATF-interacting protein binding domain
    cl00213
    Location:950 → 1088
    DNA_BRE_C; DNA breaking-rejoining enzymes, C-terminal catalytic domain

  7. XM_038155154.1 → XP_038011082.1  activating transcription factor 7-interacting protein 1 isoform X5

    Conserved Domains (3) summary
    pfam05109
    Location:493 → 774
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    pfam16788
    Location:392 → 603
    ATF7IP_BD; ATF-interacting protein binding domain
    cl00213
    Location:950 → 1088
    DNA_BRE_C; DNA breaking-rejoining enzymes, C-terminal catalytic domain

  8. XM_038155149.1 → XP_038011077.1  activating transcription factor 7-interacting protein 1 isoform X5

    Conserved Domains (3) summary
    pfam05109
    Location:493 → 774
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    pfam16788
    Location:392 → 603
    ATF7IP_BD; ATF-interacting protein binding domain
    cl00213
    Location:950 → 1088
    DNA_BRE_C; DNA breaking-rejoining enzymes, C-terminal catalytic domain

  9. XM_038155148.1 → XP_038011076.1  activating transcription factor 7-interacting protein 1 isoform X5

    Conserved Domains (3) summary
    pfam05109
    Location:493 → 774
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    pfam16788
    Location:392 → 603
    ATF7IP_BD; ATF-interacting protein binding domain
    cl00213
    Location:950 → 1088
    DNA_BRE_C; DNA breaking-rejoining enzymes, C-terminal catalytic domain

  10. XM_038155155.1 → XP_038011083.1  activating transcription factor 7-interacting protein 1 isoform X5

    Conserved Domains (3) summary
    pfam05109
    Location:493 → 774
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    pfam16788
    Location:392 → 603
    ATF7IP_BD; ATF-interacting protein binding domain
    cl00213
    Location:950 → 1088
    DNA_BRE_C; DNA breaking-rejoining enzymes, C-terminal catalytic domain

  11. XM_038155143.1 → XP_038011071.1  activating transcription factor 7-interacting protein 1 isoform X1

    Conserved Domains (3) summary
    pfam05109
    Location:526 → 807
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    pfam16788
    Location:425 → 636
    ATF7IP_BD; ATF-interacting protein binding domain
    cl00213
    Location:983 → 1121
    DNA_BRE_C; DNA breaking-rejoining enzymes, C-terminal catalytic domain

  12. XM_038155144.1 → XP_038011072.1  activating transcription factor 7-interacting protein 1 isoform X2

    Conserved Domains (3) summary
    pfam05109
    Location:526 → 807
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    pfam16788
    Location:425 → 636
    ATF7IP_BD; ATF-interacting protein binding domain
    cl00213
    Location:982 → 1120
    DNA_BRE_C; DNA breaking-rejoining enzymes, C-terminal catalytic domain

  13. XM_038155161.1 → XP_038011089.1  activating transcription factor 7-interacting protein 1 isoform X8

    Conserved Domains (2) summary
    pfam16788
    Location:425 → 645
    ATF7IP_BD; ATF-interacting protein binding domain
    cl00213
    Location:811 → 949
    DNA_BRE_C; DNA breaking-rejoining enzymes, C-terminal catalytic domain

  14. XM_038155146.1 → XP_038011074.1  activating transcription factor 7-interacting protein 1 isoform X4

    Conserved Domains (3) summary
    pfam05109
    Location:497 → 778
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    pfam16788
    Location:396 → 607
    ATF7IP_BD; ATF-interacting protein binding domain
    cl00213
    Location:954 → 1092
    DNA_BRE_C; DNA breaking-rejoining enzymes, C-terminal catalytic domain

  15. XM_038155157.1 → XP_038011085.1  activating transcription factor 7-interacting protein 1 isoform X5

    Conserved Domains (3) summary
    pfam05109
    Location:493 → 774
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    pfam16788
    Location:392 → 603
    ATF7IP_BD; ATF-interacting protein binding domain
    cl00213
    Location:950 → 1088
    DNA_BRE_C; DNA breaking-rejoining enzymes, C-terminal catalytic domain

  16. XM_038155159.1 → XP_038011087.1  activating transcription factor 7-interacting protein 1 isoform X6

    Conserved Domains (3) summary
    PHA03247
    Location:531 → 1049
    PHA03247; large tegument protein UL36; Provisional
    pfam16788
    Location:425 → 636
    ATF7IP_BD; ATF-interacting protein binding domain
    pfam16794
    Location:1031 → 1131
    fn3_4; Fibronectin-III type domain

  17. XM_038155160.1 → XP_038011088.1  activating transcription factor 7-interacting protein 1 isoform X7

    Conserved Domains (3) summary
    PHA03247
    Location:531 → 1048
    PHA03247; large tegument protein UL36; Provisional
    pfam16788
    Location:425 → 636
    ATF7IP_BD; ATF-interacting protein binding domain
    pfam16794
    Location:1030 → 1130
    fn3_4; Fibronectin-III type domain

  18. XM_038155145.1 → XP_038011073.1  activating transcription factor 7-interacting protein 1 isoform X3

    Conserved Domains (3) summary
    pfam05109
    Location:508 → 789
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    pfam16788
    Location:407 → 618
    ATF7IP_BD; ATF-interacting protein binding domain
    cl00213
    Location:965 → 1103
    DNA_BRE_C; DNA breaking-rejoining enzymes, C-terminal catalytic domain
Nucleotide Protein
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