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Chpf Chondroitin polymerizing factor [ Hermetia illucens (black soldier fly) ]

Gene ID: 119656829, updated on 23-May-2024

Summary

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Gene symbol
Chpf
Gene description
Chondroitin polymerizing factor
Locus tag
HERILL_LOCUS12333
See related
EnsemblRapid:LOC119656829
Gene type
protein coding
RefSeq status
MODEL
Organism
Hermetia illucens
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Stratiomyomorpha; Stratiomyidae; Hermetiinae; Hermetia
Orthologs
fruit fly all
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Genomic context

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See Chpf in Genome Data Viewer
Location:
chromosome: 5
Exon count:
8
Annotation release Status Assembly Chr Location
100 current iHerIll2.2.curated.20191125 (GCF_905115235.1) 5 NC_051853.1 (9173337..9295818, complement)

Chromosome 5 - NC_051853.1Genomic Context describing neighboring genes Neighboring gene probable alpha-aspartyl dipeptidase Neighboring gene PvuII-PstI homology 13 Neighboring gene Actin-related protein 2 Neighboring gene NIF3-like protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_051853.1 Chromosome 5 Reference iHerIll2.2.curated.20191125 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate glucuronyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Hermetia illucens Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference iHerIll2.2.curated.20191125 Primary Assembly

Genomic

  1. NC_051853.1 Reference iHerIll2.2.curated.20191125 Primary Assembly

    Range
    9173337..9295818 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038063475.1 → XP_037919403.1  chondroitin sulfate glucuronyltransferase

    UniProtKB/TrEMBL
    A0A7R8Z1H4
    Related
    XP_037919403.1, XM_038063475.1
    Conserved Domains (1) summary
    pfam05679
    Location:234 → 781
    CHGN; Chondroitin N-acetylgalactosaminyltransferase
Nucleotide Protein
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