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LOC119647243 protein Shroom [ Hermetia illucens (black soldier fly) ]

Gene ID: 119647243, updated on 10-May-2024

Summary

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Gene symbol
LOC119647243
Gene description
protein Shroom
Locus tag
HERILL_LOCUS1018
See related
EnsemblRapid:LOC119647243
Gene type
protein coding
RefSeq status
MODEL
Organism
Hermetia illucens
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Stratiomyomorpha; Stratiomyidae; Hermetiinae; Hermetia
Orthologs
fruit fly all
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Genomic context

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See LOC119647243 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
9
Annotation release Status Assembly Chr Location
100 current iHerIll2.2.curated.20191125 (GCF_905115235.1) 1 NC_051849.1 (53719309..54499696)

Chromosome 1 - NC_051849.1Genomic Context describing neighboring genes Neighboring gene prohibitin-2 Neighboring gene uncharacterized LOC119661198 Neighboring gene uncharacterized LOC119647244 Neighboring gene beta-1,4-glucuronyltransferase 1 Neighboring gene endocuticle structural glycoprotein SgAbd-3-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_051849.1 Chromosome 1 Reference iHerIll2.2.curated.20191125 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin filament organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in apical junction complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in apical plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cortical actin cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein Shroom

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Hermetia illucens Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference iHerIll2.2.curated.20191125 Primary Assembly

Genomic

  1. NC_051849.1 Reference iHerIll2.2.curated.20191125 Primary Assembly

    Range
    53719309..54499696
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038048109.1 → XP_037904037.1  protein Shroom isoform X2

    Related
    XP_037904037.1, XM_038048109.1
    Conserved Domains (2) summary
    PTZ00449
    Location:878 → 1022
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    pfam08687
    Location:1467 → 1677
    ASD2; Apx/Shroom domain ASD2

  2. XM_038048108.1 → XP_037904036.1  protein Shroom isoform X1

    Related
    XP_037904036.1, XM_038048108.1
    Conserved Domains (2) summary
    PTZ00449
    Location:878 → 1022
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    pfam08687
    Location:1467 → 1766
    ASD2; Apx/Shroom domain ASD2
Nucleotide Protein
Heading Accession and Version

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