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Tmtc4 Transmembrane O-mannosyltransferase targeting cadherins 4 [ Lucilia sericata (common green bottle fly) ]

Gene ID: 119599579, updated on 16-May-2024

Summary

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Gene symbol
Tmtc4
Gene description
Transmembrane O-mannosyltransferase targeting cadherins 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Lucilia sericata
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Oestroidea; Calliphoridae; Luciliinae; Lucilia
Orthologs
fruit fly all
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Genomic context

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See Tmtc4 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
100 current ASM1558622v1 (GCF_015586225.1) Unplaced Scaffold NW_023994115.1 (539876..543077)

NW_023994115.1Genomic Context describing neighboring genes Neighboring gene PR domain zinc finger protein 15 Neighboring gene uncharacterized LOC119599569 Neighboring gene trafficking protein particle complex subunit Trs33 Neighboring gene cysteine protease ATG4C Neighboring gene yemanuclein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_023994115 Unplaced Scaffold Reference ASM1558622v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endoplasmic reticulum unfolded protein response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-mannosyl-transferase TMTC4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lucilia sericata Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1558622v1 Primary Assembly

Genomic

  1. NW_023994115.1 Reference ASM1558622v1 Primary Assembly

    Range
    539876..543077
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037949390.1 → XP_037805318.1  protein O-mannosyl-transferase TMTC4

    Conserved Domains (3) summary
    TIGR02917
    Location:430 → 688
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:479 → 505
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:261 → 333
    DUF1736; Domain of unknown function (DUF1736)
Nucleotide Protein
Heading Accession and Version

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