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LOC119594360 protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1-like [ Penaeus monodon (black tiger shrimp) ]

Gene ID: 119594360, updated on 7-Dec-2023

Summary

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Gene symbol
LOC119594360
Gene description
protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1-like
See related
EnsemblRapid:LOC119594360
Gene type
protein coding
RefSeq status
MODEL
Organism
Penaeus monodon
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Malacostraca; Eumalacostraca; Eucarida; Decapoda; Dendrobranchiata; Penaeoidea; Penaeidae; Penaeus
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See LOC119594360 in Genome Data Viewer
Location:
chromosome: 33
Exon count:
17
Annotation release Status Assembly Chr Location
100 current NSTDA_Pmon_1 (GCF_015228065.1) 33 NC_051418.1 (30009373..30144939)

Chromosome 33 - NC_051418.1Genomic Context describing neighboring genes Neighboring gene Ubiquitin-specific protease 7 Neighboring gene putative small proline-rich protein 5 Neighboring gene medium-chain acyl-CoA ligase ACSF2, mitochondrial-like Neighboring gene SAP domain-containing ribonucleoprotein-like Neighboring gene medium-chain acyl-CoA ligase ACSF2, mitochondrial-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_051418.1 Chromosome 33 Reference NSTDA_Pmon_1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. QTL for white spot syndrome virus resistance and the sex-determining locus in the Indian black tiger shrimp (Penaeus monodon). Robinson NA, et al. BMC Genomics, 2014 Aug 28. PMID 25164406, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in O-glycan processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Penaeus monodon Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NSTDA_Pmon_1 Primary Assembly

Genomic

  1. NC_051418.1 Reference NSTDA_Pmon_1 Primary Assembly

    Range
    30009373..30144939
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037943416.1 → XP_037799344.1  protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1-like

    Related
    XP_037799344.1, XM_037943416.1
    Conserved Domains (2) summary
    cd13937
    Location:118 → 265
    PANDER_GnT-1_2_like; PANDER-like domain of N-acetylglucosaminyltransferases
    cl11394
    Location:320 → 646
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases