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LOC119579588 carotenoid isomerooxygenase-like [ Penaeus monodon (black tiger shrimp) ]

Gene ID: 119579588, updated on 7-Dec-2023

Summary

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Gene symbol
LOC119579588
Gene description
carotenoid isomerooxygenase-like
See related
EnsemblRapid:LOC119579588
Gene type
protein coding
RefSeq status
MODEL
Organism
Penaeus monodon
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Malacostraca; Eumalacostraca; Eucarida; Decapoda; Dendrobranchiata; Penaeoidea; Penaeidae; Penaeus
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Genomic context

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See LOC119579588 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
10
Annotation release Status Assembly Chr Location
100 current NSTDA_Pmon_1 (GCF_015228065.1) 12 NC_051397.1 (52259713..52264297, complement)

Chromosome 12 - NC_051397.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119579585 Neighboring gene carotenoid isomerooxygenase-like Neighboring gene uncharacterized LOC119579589 Neighboring gene SURP and G-patch domain-containing protein 1-like Neighboring gene uncharacterized LOC119579756 Neighboring gene uncharacterized LOC119579757

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_051397.1 Chromosome 12 Reference NSTDA_Pmon_1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-carotene 15,15'-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables carotenoid dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carotene catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retinal metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carotenoid isomerooxygenase-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Penaeus monodon Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NSTDA_Pmon_1 Primary Assembly

Genomic

  1. NC_051397.1 Reference NSTDA_Pmon_1 Primary Assembly

    Range
    52259713..52264297 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037927510.1 → XP_037783438.1  carotenoid isomerooxygenase-like

    Related
    XP_037783438.1, XM_037927510.1
    Conserved Domains (1) summary
    pfam03055
    Location:15 → 520
    RPE65; Retinal pigment epithelial membrane protein
Nucleotide Protein
Heading Accession and Version

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