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SWIP strumpellin and WASH-interacting protein [ Penaeus monodon (black tiger shrimp) ]

Gene ID: 119577872, updated on 3-Jul-2024

Summary

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Gene symbol
SWIP
Gene description
strumpellin and WASH-interacting protein
See related
EnsemblRapid:LOC119577872
Gene type
protein coding
RefSeq status
MODEL
Organism
Penaeus monodon
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Malacostraca; Eumalacostraca; Eucarida; Decapoda; Dendrobranchiata; Penaeoidea; Penaeidae; Penaeus
Orthologs
fruit fly all
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Genomic context

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See SWIP in Genome Data Viewer
Location:
chromosome: 10
Exon count:
22
Annotation release Status Assembly Chr Location
100 current NSTDA_Pmon_1 (GCF_015228065.1) 10 NC_051395.1 (14595032..14608524, complement)

Chromosome 10 - NC_051395.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein C1orf50 homolog Neighboring gene protein FAM200B-like Neighboring gene small nucleolar RNA SNORA23 Neighboring gene ruvB-like 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_051395.1 Chromosome 10 Reference NSTDA_Pmon_1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in endosomal transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endosome organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of WASH complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
WASH complex subunit 4-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Penaeus monodon Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NSTDA_Pmon_1 Primary Assembly

Genomic

  1. NC_051395.1 Reference NSTDA_Pmon_1 Primary Assembly

    Range
    14595032..14608524 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037925496.1 → XP_037781424.1  WASH complex subunit 4-like

    Related
    XP_037781424.1, XM_037925496.1
    Conserved Domains (3) summary
    pfam14744
    Location:596 → 938
    WASH-7_mid; WASH complex subunit 7
    pfam14745
    Location:24 → 590
    WASH-7_N; WASH complex subunit 7, N-terminal
    pfam14746
    Location:955 → 1123
    WASH-7_C; WASH complex subunit 7, C-terminal
Nucleotide Protein
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