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Hcf Host cell factor [ Dermacentor silvarum ]

Gene ID: 119460810, updated on 3-Jul-2024

Summary

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Gene symbol
Hcf
Gene description
Host cell factor
See related
VectorBase:DSIL_082918; EnsemblRapid:LOC119460810
Gene type
protein coding
RefSeq status
MODEL
Organism
Dermacentor silvarum
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Chelicerata; Arachnida; Acari; Parasitiformes; Ixodida; Ixodoidea; Ixodidae; Rhipicephalinae; Dermacentor
Orthologs
fruit fly all
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Genomic context

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See Hcf in Genome Data Viewer
Location:
chromosome: 8
Exon count:
20
Annotation release Status Assembly Chr Location
101 current BIME_Dsil_1.4 (GCF_013339745.2) 8 NC_051161.1 (23668328..23706126)
100 previous assembly ASM1333974v1 (GCF_013339745.1) 8 NC_051161.1 (23668322..23706126)

Chromosome 8 - NC_051161.1Genomic Context describing neighboring genes Neighboring gene U7 snRNA-associated Sm-like protein LSm10 Neighboring gene solute carrier family 35 member E3 Neighboring gene adipocyte enhancer-binding protein 1 Neighboring gene U2 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone methyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
host cell factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Dermacentor silvarum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BIME_Dsil_1.4 Primary Assembly

Genomic

  1. NC_051161.1 Reference BIME_Dsil_1.4 Primary Assembly

    Range
    23668328..23706126
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037721904.2 → XP_037577832.1  host cell factor 1 isoform X1

    Related
    XP_037577832.1, XM_037721904.2
    Conserved Domains (5) summary
    PLN02193
    Location:7 → 312
    PLN02193; nitrile-specifier protein
    cd00063
    Location:1615 → 1644
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:190 → 243
    Kelch; KELCH repeat [structural motif]
    NF033759
    Location:1061 → 1287
    exchanger_TraA; outer membrane exchange protein TraA
    cl41773
    Location:611 → 828
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

  2. XM_049672524.1 → XP_049528481.1  host cell factor 1 isoform X2

    Related
    XP_049528481.1, XM_049672524.1
Nucleotide Protein
Heading Accession and Version

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