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LOC119460578 aspartyl/asparaginyl beta-hydroxylase [ Dermacentor silvarum ]

Gene ID: 119460578, updated on 28-Mar-2024

Summary

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Gene symbol
LOC119460578
Gene description
aspartyl/asparaginyl beta-hydroxylase
See related
VectorBase:DSIL_075802; EnsemblRapid:LOC119460578
Gene type
protein coding
RefSeq status
MODEL
Organism
Dermacentor silvarum
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Chelicerata; Arachnida; Acari; Parasitiformes; Ixodida; Ixodoidea; Ixodidae; Rhipicephalinae; Dermacentor
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Genomic context

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See LOC119460578 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
14
Annotation release Status Assembly Chr Location
101 current BIME_Dsil_1.4 (GCF_013339745.2) 8 NC_051161.1 (7735105..7761538, complement)
100 previous assembly ASM1333974v1 (GCF_013339745.1) 8 NC_051161.1 (7735281..7761543, complement)

Chromosome 8 - NC_051161.1Genomic Context describing neighboring genes Neighboring gene zinc finger MYM-type protein 4-like Neighboring gene zinc finger MYM-type protein 2-like Neighboring gene Hairy/E(spl)-related with YRPW motif Neighboring gene collagen alpha-1(II) chain Neighboring gene uncharacterized LOC125947526

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-aspartic acid 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-aspartic acid hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aspartyl/asparaginyl beta-hydroxylase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Dermacentor silvarum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BIME_Dsil_1.4 Primary Assembly

Genomic

  1. NC_051161.1 Reference BIME_Dsil_1.4 Primary Assembly

    Range
    7735105..7761538 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_049672264.1 → XP_049528221.1  aspartyl/asparaginyl beta-hydroxylase isoform X2

    Related
    XP_049528221.1, XM_049672264.1

  2. XM_037721539.2 → XP_037577467.1  aspartyl/asparaginyl beta-hydroxylase isoform X1

    Related
    XP_037577467.1, XM_037721539.2
    Conserved Domains (3) summary
    TIGR02917
    Location:273 → 476
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:379 → 403
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:514 → 665
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase
Nucleotide Protein
Heading Accession and Version

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