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LOC119455427 irregular chiasm C-roughest protein [ Dermacentor silvarum ]

Gene ID: 119455427, updated on 28-Mar-2024

Summary

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Gene symbol
LOC119455427
Gene description
irregular chiasm C-roughest protein
See related
VectorBase:DSIL_090429; EnsemblRapid:LOC119455427
Gene type
protein coding
RefSeq status
MODEL
Organism
Dermacentor silvarum
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Chelicerata; Arachnida; Acari; Parasitiformes; Ixodida; Ixodoidea; Ixodidae; Rhipicephalinae; Dermacentor
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Genomic context

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See LOC119455427 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
21
Annotation release Status Assembly Chr Location
101 current BIME_Dsil_1.4 (GCF_013339745.2) 6 NC_051159.1 (35201461..35556889, complement)
100 previous assembly ASM1333974v1 (GCF_013339745.1) 6 NC_051159.1 (35201457..35312679, complement)

Chromosome 6 - NC_051159.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119455426 Neighboring gene uncharacterized LOC125946113 Neighboring gene uncharacterized LOC125946280 Neighboring gene uncharacterized LOC125946281

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
irregular chiasm C-roughest protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Dermacentor silvarum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BIME_Dsil_1.4 Primary Assembly

Genomic

  1. NC_051159.1 Reference BIME_Dsil_1.4 Primary Assembly

    Range
    35201461..35556889 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_049668760.1 → XP_049524717.1  irregular chiasm C-roughest protein

    Related
    XP_049524717.1, XM_049668760.1

  2. XM_037716833.2 → XP_037572761.1  irregular chiasm C-roughest protein

    Related
    XP_037572761.1, XM_037716833.2
    Conserved Domains (4) summary
    smart00410
    Location:77 → 170
    IG_like; Immunoglobulin like
    pfam13927
    Location:372 → 431
    Ig_3; Immunoglobulin domain
    cd00096
    Location:449 → 453
    Ig; Ig strand A [structural motif]
    cl11960
    Location:448 → 544
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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