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LOC119442455 zeta-sarcoglycan [ Dermacentor silvarum ]

Gene ID: 119442455, updated on 28-Mar-2024

Summary

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Gene symbol
LOC119442455
Gene description
zeta-sarcoglycan
See related
VectorBase:DSIL_078781; EnsemblRapid:LOC119442455
Gene type
protein coding
RefSeq status
MODEL
Organism
Dermacentor silvarum
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Chelicerata; Arachnida; Acari; Parasitiformes; Ixodida; Ixodoidea; Ixodidae; Rhipicephalinae; Dermacentor
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Genomic context

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See LOC119442455 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
8
Annotation release Status Assembly Chr Location
101 current BIME_Dsil_1.4 (GCF_013339745.2) 2 NC_051155.1 (201718118..201726189)
100 previous assembly ASM1333974v1 (GCF_013339745.1) 2 NC_051155.1 (201718019..201726175)

Chromosome 2 - NC_051155.1Genomic Context describing neighboring genes Neighboring gene sulfotransferase ssu-1 Neighboring gene sulfotransferase ssu-1-like Neighboring gene delta-sarcoglycan Neighboring gene uncharacterized LOC119442459

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zeta-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Dermacentor silvarum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BIME_Dsil_1.4 Primary Assembly

Genomic

  1. NC_051155.1 Reference BIME_Dsil_1.4 Primary Assembly

    Range
    201718118..201726189
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037707350.2 → XP_037563278.1  zeta-sarcoglycan

    Related
    XP_037563278.1, XM_037707350.2
    Conserved Domains (1) summary
    pfam04790
    Location:28 → 278
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases