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rfng RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase [ Nematolebias whitei (Rio pearlfish) ]

Gene ID: 119423737, updated on 21-Mar-2024

Summary

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Gene symbol
rfng
Gene description
RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
Gene type
protein coding
RefSeq status
MODEL
Organism
Nematolebias whitei
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Rivulidae; Nematolebias
Orthologs
human zebrafish all
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Genomic context

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See rfng in Genome Data Viewer
Location:
chromosome: 17
Exon count:
8
Annotation release Status Assembly Chr Location
100.20210725 current NemWhi1 (GCF_014905685.2) 17 NC_056514.1 (3409927..3422801)
100 previous assembly NemWhi1 (GCF_014905685.1) Unplaced Scaffold NW_023618562.1 (3409927..3422801)

Chromosome 17 - NC_056514.1Genomic Context describing neighboring genes Neighboring gene caveolae associated protein 1b Neighboring gene V-type proton ATPase 116 kDa subunit a1 Neighboring gene dicarbonyl/L-xylulose reductase Neighboring gene Rac family small GTPase 3b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of Notch signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: beta-1,3-N-acetylglucosaminyltransferase radical fringe

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nematolebias whitei Updated Annotation Release 100.20210725

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NemWhi1

Genomic

  1. NC_056514.1 Reference NemWhi1

    Range
    3409927..3422801
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037691146.1 → XP_037547074.1  LOW QUALITY PROTEIN: beta-1,3-N-acetylglucosaminyltransferase radical fringe

    Conserved Domains (1) summary
    pfam02434
    Location:117 → 374
    Fringe; Fringe-like
Nucleotide Protein
Heading Accession and Version

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