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LOC119412485 mitochondrial carnitine/acylcarnitine carrier protein [ Nematolebias whitei (Rio pearlfish) ]

Gene ID: 119412485, updated on 7-Dec-2023

Summary

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Gene symbol
LOC119412485
Gene description
mitochondrial carnitine/acylcarnitine carrier protein
Gene type
protein coding
RefSeq status
MODEL
Organism
Nematolebias whitei
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Rivulidae; Nematolebias
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Genomic context

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See LOC119412485 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
21
Annotation release Status Assembly Chr Location
100.20210725 current NemWhi1 (GCF_014905685.2) 7 NC_056504.1 (39408720..39427883)
100 previous assembly NemWhi1 (GCF_014905685.1) Unplaced Scaffold NW_023618552.1 (39408720..39427883)

Chromosome 7 - NC_056504.1Genomic Context describing neighboring genes Neighboring gene NADH:ubiquinone oxidoreductase complex assembly factor Neighboring gene NCK-interacting protein with SH3 domain Neighboring gene msx2-interacting protein Neighboring gene filamin binding LIM protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acyl carnitine transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carnitine transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitochondrial transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrial envelope IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cAMP-dependent protein kinase type II-alpha regulatory subunit; mitochondrial carnitine/acylcarnitine carrier protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nematolebias whitei Updated Annotation Release 100.20210725

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NemWhi1

Genomic

  1. NC_056504.1 Reference NemWhi1

    Range
    39408720..39427883
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037679499.1 → XP_037535427.1  cAMP-dependent protein kinase type II-alpha regulatory subunit isoform X2

    Conserved Domains (3) summary
    cd00038
    Location:461 → 581
    CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...
    pfam00153
    Location:106 → 198
    Mito_carr; Mitochondrial carrier protein
    cl02594
    Location:207 → 246
    DD_R_PKA; Dimerization/Docking domain of the Regulatory subunit of cAMP-dependent protein kinase and similar domains

  2. XM_037679497.1 → XP_037535425.1  mitochondrial carnitine/acylcarnitine carrier protein isoform X1

    Conserved Domains (1) summary
    pfam00153
    Location:106 → 198
    Mito_carr; Mitochondrial carrier protein
Nucleotide Protein
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