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pgr progesterone receptor [ Nematolebias whitei (Rio pearlfish) ]

Gene ID: 119411368, updated on 21-Mar-2024

Summary

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Gene symbol
pgr
Gene description
progesterone receptor
Gene type
protein coding
RefSeq status
MODEL
Organism
Nematolebias whitei
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Rivulidae; Nematolebias
Orthologs
zebrafish all
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Genomic context

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See pgr in Genome Data Viewer
Location:
chromosome: 6
Exon count:
8
Annotation release Status Assembly Chr Location
100.20210725 current NemWhi1 (GCF_014905685.2) 6 NC_056503.1 (42665918..42680204)
100 previous assembly NemWhi1 (GCF_014905685.1) Unplaced Scaffold NW_023618551.1 (42665918..42680204)

Chromosome 6 - NC_056503.1Genomic Context describing neighboring genes Neighboring gene centrosomal protein 126 Neighboring gene transient receptor potential cation channel, subfamily C, member 6b Neighboring gene rho GTPase-activating protein 42 Neighboring gene contactin 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
progesterone receptor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nematolebias whitei Updated Annotation Release 100.20210725

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NemWhi1

Genomic

  1. NC_056503.1 Reference NemWhi1

    Range
    42665918..42680204
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037678310.1 → XP_037534238.1  progesterone receptor isoform X1

    Conserved Domains (2) summary
    cd07172
    Location:285 → 362
    NR_DBD_GR_PR; DNA-binding domain of glucocorticoid receptor (GR) is composed of two C4-type zinc fingers
    cl11397
    Location:408 → 655
    NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators

  2. XM_037678311.1 → XP_037534239.1  progesterone receptor isoform X2

    Conserved Domains (2) summary
    cd07172
    Location:239 → 316
    NR_DBD_GR_PR; DNA-binding domain of glucocorticoid receptor (GR) is composed of two C4-type zinc fingers
    cl11397
    Location:362 → 609
    NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators

  3. XM_037678312.1 → XP_037534240.1  progesterone receptor isoform X3

    Conserved Domains (2) summary
    cd07172
    Location:175 → 252
    NR_DBD_GR_PR; DNA-binding domain of glucocorticoid receptor (GR) is composed of two C4-type zinc fingers
    cl11397
    Location:298 → 545
    NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators
Nucleotide Protein
Heading Accession and Version

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