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zbtb44 zinc finger and BTB domain containing 44 [ Nematolebias whitei (Rio pearlfish) ]

Gene ID: 119411062, updated on 21-Mar-2024

Summary

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Gene symbol
zbtb44
Gene description
zinc finger and BTB domain containing 44
Gene type
protein coding
RefSeq status
MODEL
Organism
Nematolebias whitei
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Rivulidae; Nematolebias
Orthologs
human zebrafish all
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Genomic context

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See zbtb44 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
6
Annotation release Status Assembly Chr Location
100.20210725 current NemWhi1 (GCF_014905685.2) 6 NC_056503.1 (1578790..1647835)
100 previous assembly NemWhi1 (GCF_014905685.1) Unplaced Scaffold NW_023618551.1 (1578790..1647835)

Chromosome 6 - NC_056503.1Genomic Context describing neighboring genes Neighboring gene ephexin-1 Neighboring gene succinate dehydrogenase [ubiquinone] cytochrome b small subunit B, mitochondrial Neighboring gene A disintegrin and metalloproteinase with thrombospondin motifs 8-like Neighboring gene uncharacterized LOC119411475

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger and BTB domain-containing protein 44

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nematolebias whitei Updated Annotation Release 100.20210725

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NemWhi1

Genomic

  1. NC_056503.1 Reference NemWhi1

    Range
    1578790..1647835
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037677983.1 → XP_037533911.1  zinc finger and BTB domain-containing protein 44 isoform X1

    Conserved Domains (6) summary
    COG5189
    Location:310 → 460
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:412 → 432
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00020
    Location:500 → 522
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cl38908
    Location:12 → 130
    BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily
    pfam00096
    Location:410 → 432
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:424 → 449
    zf-H2C2_2; Zinc-finger double domain

  2. XM_037677984.1 → XP_037533912.1  zinc finger and BTB domain-containing protein 44 isoform X2

    Conserved Domains (5) summary
    COG5189
    Location:310 → 460
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:412 → 432
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cl38908
    Location:12 → 130
    BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily
    pfam00096
    Location:410 → 432
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:424 → 449
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
Heading Accession and Version

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