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kirrel3b kirre like nephrin family adhesion molecule 3b [ Nematolebias whitei (Rio pearlfish) ]

Gene ID: 119410852, updated on 21-Mar-2024

Summary

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Gene symbol
kirrel3b
Gene description
kirre like nephrin family adhesion molecule 3b
Gene type
protein coding
RefSeq status
MODEL
Organism
Nematolebias whitei
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Rivulidae; Nematolebias
Orthologs
zebrafish all
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Genomic context

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See kirrel3b in Genome Data Viewer
Location:
chromosome: 6
Exon count:
10
Annotation release Status Assembly Chr Location
100.20210725 current NemWhi1 (GCF_014905685.2) 6 NC_056503.1 (23340315..23654603)
100 previous assembly NemWhi1 (GCF_014905685.1) Unplaced Scaffold NW_023618551.1 (23340315..23654603)

Chromosome 6 - NC_056503.1Genomic Context describing neighboring genes Neighboring gene v-ets avian erythroblastosis virus E26 oncogene homolog 1 Neighboring gene somatolactin alpha Neighboring gene Down syndrome cell adhesion molecule homolog Neighboring gene BARX homeobox 2 Neighboring gene RNA binding motif protein 7 Neighboring gene CXADR-like membrane protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synapse assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
kin of IRRE-like protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nematolebias whitei Updated Annotation Release 100.20210725

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NemWhi1

Genomic

  1. NC_056503.1 Reference NemWhi1

    Range
    23340315..23654603
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037677772.1 → XP_037533700.1  kin of IRRE-like protein 3

    Conserved Domains (4) summary
    smart00410
    Location:6 → 95
    IG_like; Immunoglobulin like
    cd00096
    Location:371 → 375
    Ig; Ig strand A [structural motif]
    cd05759
    Location:101 → 198
    IgI_2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
    cl11960
    Location:370 → 403
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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