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pomgnt2 protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-) [ Nematolebias whitei (Rio pearlfish) ]

Gene ID: 119410273, updated on 21-Mar-2024

Summary

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Gene symbol
pomgnt2
Gene description
protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-)
Gene type
protein coding
RefSeq status
MODEL
Organism
Nematolebias whitei
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Rivulidae; Nematolebias
Also known as
glyt
Orthologs
human zebrafish all
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Genomic context

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See pomgnt2 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
2
Annotation release Status Assembly Chr Location
100.20210725 current NemWhi1 (GCF_014905685.2) 5 NC_056502.1 (44095981..44119113, complement)
100 previous assembly NemWhi1 (GCF_014905685.1) Unplaced Scaffold NW_023618550.1 (44095981..44119113, complement)

Chromosome 5 - NC_056502.1Genomic Context describing neighboring genes Neighboring gene TGF-beta receptor type-2 Neighboring gene transfer RNA proline (anticodon CGG) Neighboring gene uncharacterized LOC119409568 Neighboring gene uncharacterized LOC119409569

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein O-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2
Names
glycosyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nematolebias whitei Updated Annotation Release 100.20210725

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NemWhi1

Genomic

  1. NC_056502.1 Reference NemWhi1

    Range
    44095981..44119113 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037677190.1 → XP_037533118.1  protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2

    Conserved Domains (2) summary
    cd00063
    Location:524 → 602
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam04577
    Location:303 → 419
    DUF563; Protein of unknown function (DUF563)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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