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hs6st2 heparan sulfate 6-O-sulfotransferase 2 [ Nematolebias whitei (Rio pearlfish) ]

Gene ID: 119408923, updated on 21-Mar-2024

Summary

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Gene symbol
hs6st2
Gene description
heparan sulfate 6-O-sulfotransferase 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Nematolebias whitei
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Rivulidae; Nematolebias
Orthologs
zebrafish all
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Genomic context

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See hs6st2 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
2
Annotation release Status Assembly Chr Location
100.20210725 current NemWhi1 (GCF_014905685.2) 4 NC_056501.1 (16552517..16555016, complement)
100 previous assembly NemWhi1 (GCF_014905685.1) Unplaced Scaffold NW_023618549.1 (16552517..16555016, complement)

Chromosome 4 - NC_056501.1Genomic Context describing neighboring genes Neighboring gene RAP2C, member of RAS oncogene family Neighboring gene muscleblind-like splicing regulator 3 Neighboring gene Transmembrane protein 179-like Neighboring gene heterogeneous nuclear ribonucleoprotein U-like protein 2 Neighboring gene nudix (nucleoside diphosphate linked moiety X)-type motif 22

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heparan sulfate 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, enzymatic modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparan-sulfate 6-O-sulfotransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nematolebias whitei Updated Annotation Release 100.20210725

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NemWhi1

Genomic

  1. NC_056501.1 Reference NemWhi1

    Range
    16552517..16555016 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037675781.1 → XP_037531709.1  heparan-sulfate 6-O-sulfotransferase 2

    Conserved Domains (1) summary
    pfam03567
    Location:102 → 367
    Sulfotransfer_2; Sulfotransferase family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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