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ASPH aspartate beta-hydroxylase [ Talpa occidentalis (Iberian mole) ]

Gene ID: 119241118, updated on 21-Mar-2024

Summary

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Gene symbol
ASPH
Gene description
aspartate beta-hydroxylase
Gene type
protein coding
RefSeq status
MODEL
Organism
Talpa occidentalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Eulipotyphla; Talpidae; Talpa
Orthologs
human mouse all
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Genomic context

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See ASPH in Genome Data Viewer
Location:
chromosome: Un
Exon count:
30
Annotation release Status Assembly Chr Location
RS_2023_03 current MPIMG_talOcc4v2.1 (GCF_014898055.3) Unplaced Scaffold NW_026555331.1 (59683255..59879781)

NW_026555331.1Genomic Context describing neighboring genes Neighboring gene sodium/potassium transporting ATPase interacting 3 Neighboring gene ubiquitin-40S ribosomal protein S27a-like Neighboring gene glyceraldehyde-3-phosphate dehydrogenase-like Neighboring gene uncharacterized LOC119241148 Neighboring gene clavesin 1 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase-like Neighboring gene chromodomain helicase DNA binding protein 7

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_026555331 Unplaced Scaffold Reference MPIMG_talOcc4v2.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-aspartic acid 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-aspartic acid hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aspartyl/asparaginyl beta-hydroxylase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_014898055.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MPIMG_talOcc4v2.1 Primary Assembly

Genomic

  1. NW_026555331.1 Reference MPIMG_talOcc4v2.1 Primary Assembly

    Range
    59683255..59879781
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054692244.1 → XP_054548219.1  aspartyl/asparaginyl beta-hydroxylase isoform X13

  2. XM_037506220.2 → XP_037362117.1  aspartyl/asparaginyl beta-hydroxylase isoform X14

    Conserved Domains (1) summary
    pfam05279
    Location:54 → 240
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  3. XM_054692235.1 → XP_054548210.1  aspartyl/asparaginyl beta-hydroxylase isoform X5

  4. XM_054692242.1 → XP_054548217.1  aspartyl/asparaginyl beta-hydroxylase isoform X11

  5. XM_054692249.1 → XP_054548224.1  aspartyl/asparaginyl beta-hydroxylase isoform X19

  6. XM_054692238.1 → XP_054548213.1  aspartyl/asparaginyl beta-hydroxylase isoform X7

  7. XM_054692239.1 → XP_054548214.1  aspartyl/asparaginyl beta-hydroxylase isoform X8

  8. XM_054692246.1 → XP_054548221.1  aspartyl/asparaginyl beta-hydroxylase isoform X16

  9. XM_054692247.1 → XP_054548222.1  aspartyl/asparaginyl beta-hydroxylase isoform X17

  10. XM_054692243.1 → XP_054548218.1  aspartyl/asparaginyl beta-hydroxylase isoform X12

  11. XM_054692231.1 → XP_054548206.1  aspartyl/asparaginyl beta-hydroxylase isoform X1

  12. XM_054692233.1 → XP_054548208.1  aspartyl/asparaginyl beta-hydroxylase isoform X3

  13. XM_054692232.1 → XP_054548207.1  aspartyl/asparaginyl beta-hydroxylase isoform X2

  14. XM_054692234.1 → XP_054548209.1  aspartyl/asparaginyl beta-hydroxylase isoform X4

  15. XM_054692245.1 → XP_054548220.1  aspartyl/asparaginyl beta-hydroxylase isoform X15

  16. XM_054692241.1 → XP_054548216.1  aspartyl/asparaginyl beta-hydroxylase isoform X10

  17. XM_054692248.1 → XP_054548223.1  aspartyl/asparaginyl beta-hydroxylase isoform X18

  18. XM_054692236.1 → XP_054548211.1  aspartyl/asparaginyl beta-hydroxylase isoform X6

  19. XM_054692240.1 → XP_054548215.1  aspartyl/asparaginyl beta-hydroxylase isoform X9

Nucleotide Protein
Heading Accession and Version

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