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LOC119229898 cytokine-inducible SH2-containing protein-like [ Pungitius pungitius (ninespine stickleback) ]

Gene ID: 119229898, updated on 31-Jan-2024

Summary

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Gene symbol
LOC119229898
Gene description
cytokine-inducible SH2-containing protein-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Pungitius pungitius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Cottioidei; Gasterosteales; Gasterosteidae; Pungitius
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Genomic context

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See LOC119229898 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_01 current fPunPun2.1 (GCF_949316345.1) 8 NC_084907.1 (22354472..22358030)
100 previous assembly NSP_V7 (GCF_902500615.1) Unplaced Scaffold NW_023616471.1 (121179..124704, complement)

Chromosome 8 - NC_084907.1Genomic Context describing neighboring genes Neighboring gene WD repeat-containing protein 82-like Neighboring gene twinfilin-2-like Neighboring gene rho-related GTP-binding protein RhoA-B Neighboring gene transmembrane protein 43

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1-phosphatidylinositol-3-kinase regulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidylinositol phosphate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of phosphatidylinositol 3-kinase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cytokine-inducible SH2-containing protein-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_949316345.1-RS_2024_01

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPunPun2.1

Genomic

  1. NC_084907.1 Reference fPunPun2.1

    Range
    22354472..22358030
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037490707.2 → XP_037346604.2  cytokine-inducible SH2-containing protein-like

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases