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pomt1 protein-O-mannosyltransferase 1 [ Pungitius pungitius (ninespine stickleback) ]

Gene ID: 119225516, updated on 21-Mar-2024

Summary

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Gene symbol
pomt1
Gene description
protein-O-mannosyltransferase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Pungitius pungitius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Cottioidei; Gasterosteales; Gasterosteidae; Pungitius
Orthologs
human zebrafish all
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Genomic context

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See pomt1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2024_01 current fPunPun2.1 (GCF_949316345.1) 5 NC_084904.1 (23940766..23947881, complement)
100 previous assembly NSP_V7 (GCF_902500615.1) Unplaced Scaffold NW_023616467.1 (21817379..21825095, complement)

Chromosome 5 - NC_084904.1Genomic Context describing neighboring genes Neighboring gene caspase recruitment domain family, member 9 Neighboring gene small nuclear RNA activating complex, polypeptide 4 Neighboring gene rap guanine nucleotide exchange factor 1 Neighboring gene dynamin-1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables dolichyl-phosphate-mannose-protein mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-mannosyl-transferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_949316345.1-RS_2024_01

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPunPun2.1

Genomic

  1. NC_084904.1 Reference fPunPun2.1

    Range
    23940766..23947881 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037483415.2 → XP_037339312.2  protein O-mannosyl-transferase 1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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