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cas6f type I-F CRISPR-associated endoribonuclease Cas6/Csy4 [ Vibrio parahaemolyticus RIMD 2210633 ]

Gene ID: 1192086, updated on 6-Oct-2023

Summary

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Gene symbol
cas6f
Gene description
type I-F CRISPR-associated endoribonuclease Cas6/Csy4
Locus tag
VP_RS21805
Gene type
protein coding
Organism
Vibrio parahaemolyticus RIMD 2210633 (strain: RIMD 2210633, substrain: RIMD 2210633)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio
Old locus tag
VPA1390
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Genomic context

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Location:
chromosome: 2
Sequence:
Chromosome: 2; NC_004605.1 (1460823..1461419)

Chromosome 2 - NC_004605.1Genomic Context describing neighboring genes Neighboring gene TniQ family protein Neighboring gene type I-F CRISPR-associated protein Csy2 Neighboring gene type I-F CRISPR-associated protein Csy3 Neighboring gene helix-turn-helix transcriptional regulator Neighboring gene hypothetical protein Neighboring gene DEAD/DEAH box helicase family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_004605.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Csy4 relies on an unusual catalytic dyad to position and cleave CRISPR RNA. Haurwitz RE, et al. EMBO J, 2012 Jun 13. PMID 22522703, Free PMC Article
  2. A filamentous phage associated with recent pandemic Vibrio parahaemolyticus O3:K6 strains. Nasu H, et al. J Clin Microbiol, 2000 Jun. PMID 10834969, Free PMC Article
  3. Genome sequence of Vibrio parahaemolyticus: a pathogenic mechanism distinct from that of V cholerae. Makino K, et al. Lancet, 2003 Mar 1. PMID 12620739

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
type I-F CRISPR-associated endoribonuclease Cas6/Csy4

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_004605.1 Reference assembly

    Range
    1460823..1461419
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_005478386.1 type I-F CRISPR-associated endoribonuclease Cas6/Csy4 [Vibrio parahaemolyticus]

    See identical proteins and their annotated locations for WP_005478386.1

    UniProtKB/TrEMBL
    A0A2H4X363, Q87GC7
    Conserved Domains (1) summary
    cd09674
    Location:2 → 198
    Cas6_I-F; CRISPR/Cas system-associated RAMP superfamily protein Cas6f
Nucleotide Protein
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