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lama2 laminin, alpha 2 [ Pungitius pungitius (ninespine stickleback) ]

Gene ID: 119195096, updated on 21-Mar-2024

Summary

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Gene symbol
lama2
Gene description
laminin, alpha 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Pungitius pungitius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Cottioidei; Gasterosteales; Gasterosteidae; Pungitius
Orthologs
human zebrafish all
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Genomic context

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See lama2 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
74
Annotation release Status Assembly Chr Location
RS_2024_01 current fPunPun2.1 (GCF_949316345.1) 20 NC_084919.1 (12175479..12296637, complement)
100 previous assembly NSP_V7 (GCF_902500615.1) Unplaced Scaffold NW_023616472.1 (12433032..12554618, complement)

Chromosome 20 - NC_084919.1Genomic Context describing neighboring genes Neighboring gene signal-induced proliferation-associated 1 like 1 Neighboring gene regulator of G protein signaling 6 Neighboring gene vesicular inhibitory amino acid transporter Neighboring gene protein tyrosine phosphatase receptor type K

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables signaling receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in animal organ morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of embryonic development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basement membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
laminin subunit alpha-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_949316345.1-RS_2024_01

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPunPun2.1

Genomic

  1. NC_084919.1 Reference fPunPun2.1

    Range
    12175479..12296637 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_062559460.1 → XP_062415444.1  laminin subunit alpha-2 isoform X8

  2. XM_062559457.1 → XP_062415441.1  laminin subunit alpha-2 isoform X6

  3. XM_062559459.1 → XP_062415443.1  laminin subunit alpha-2 isoform X7

  4. XM_062559456.1 → XP_062415440.1  laminin subunit alpha-2 isoform X5

  5. XM_062559455.1 → XP_062415439.1  laminin subunit alpha-2 isoform X4

  6. XM_062559453.1 → XP_062415437.1  laminin subunit alpha-2 isoform X2

  7. XM_062559454.1 → XP_062415438.1  laminin subunit alpha-2 isoform X3

  8. XM_062559452.1 → XP_062415436.1  laminin subunit alpha-2 isoform X1

Nucleotide Protein
Heading Accession and Version

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