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LOC119105747 laminin subunit alpha-2-like [ Pollicipes pollicipes ]

Gene ID: 119105747, updated on 14-Dec-2023

Summary

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Gene symbol
LOC119105747
Gene description
laminin subunit alpha-2-like
See related
EnsemblRapid:LOC119105747
Gene type
protein coding
RefSeq status
MODEL
Organism
Pollicipes pollicipes
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Cirripedia; Thoracica; Thoracicalcarea; Pollicipedomorpha; Pollicipedidae; Pollicipes
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See LOC119105747 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
46
Annotation release Status Assembly Chr Location
100 current Ppol_2 (GCF_011947565.2) Unplaced Scaffold NW_023596818.1 (20131404..20202546)

NW_023596818.1Genomic Context describing neighboring genes Neighboring gene histamine H2 receptor-like Neighboring gene UNC93-like protein Neighboring gene uncharacterized LOC119106247 Neighboring gene uncharacterized LOC119106246 Neighboring gene uncharacterized LOC119105428

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_023596818 Unplaced Scaffold Reference Ppol_2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basement membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
laminin subunit alpha-2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pollicipes pollicipes Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ppol_2

Genomic

  1. NW_023596818.1 Reference Ppol_2

    Range
    20131404..20202546
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037229236.1 → XP_037085131.1  laminin subunit alpha-2-like isoform X1

    Related
    XP_037085131.1, XM_037229236.1
    Conserved Domains (8) summary
    PRK02224
    Location:1724 → 2226
    PRK02224; DNA double-strand break repair Rad50 ATPase
    smart00180
    Location:1051 → 1096
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    cd00055
    Location:953 → 1000
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:2637 → 2795
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam00052
    Location:1350 → 1488
    Laminin_B; Laminin B (Domain IV)
    pfam00053
    Location:1146 → 1194
    Laminin_EGF; Laminin EGF domain
    pfam00055
    Location:32 → 271
    Laminin_N; Laminin N-terminal (Domain VI)
    cl22861
    Location:2281 → 2419
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

  2. XM_037229237.1 → XP_037085132.1  laminin subunit alpha-2-like isoform X2

    Related
    XP_037085132.1, XM_037229237.1
    Conserved Domains (7) summary
    PRK02224
    Location:1687 → 2189
    PRK02224; DNA double-strand break repair Rad50 ATPase
    cd00055
    Location:1050 → 1090
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:2600 → 2758
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam00052
    Location:1313 → 1451
    Laminin_B; Laminin B (Domain IV)
    pfam00053
    Location:1146 → 1194
    Laminin_EGF; Laminin EGF domain
    pfam00055
    Location:32 → 271
    Laminin_N; Laminin N-terminal (Domain VI)
    cl22861
    Location:2244 → 2382
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
Nucleotide Protein
Heading Accession and Version

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