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LOC119081944 laminin subunit alpha-1 [ Bradysia coprophila ]

Gene ID: 119081944, updated on 10-May-2024

Summary

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Gene symbol
LOC119081944
Gene description
laminin subunit alpha-1
Gene type
protein coding
RefSeq status
MODEL
Organism
Bradysia coprophila
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Sciaroidea; Sciaridae; Bradysia
Orthologs
fruit fly all
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Genomic context

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See LOC119081944 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
33
Annotation release Status Assembly Chr Location
100 current BU_Bcop_v1 (GCF_014529535.1) Unplaced Scaffold NW_023503632.1 (1656741..1785140, complement)

NW_023503632.1Genomic Context describing neighboring genes Neighboring gene Dual-specificity tyrosine phosphorylation-regulated kinase 2 Neighboring gene multiple inositol polyphosphate phosphatase 1-like Neighboring gene pectate lyase A-like Neighboring gene non-lysosomal glucosylceramidase Neighboring gene uncharacterized LOC119082003

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_023503632 Unplaced Scaffold Reference BU_Bcop_v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
laminin subunit alpha-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bradysia coprophila Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BU_Bcop_v1

Genomic

  1. NW_023503632.1 Reference BU_Bcop_v1

    Range
    1656741..1785140 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037191208.1 → XP_037047103.1  laminin subunit alpha-1 isoform X1

    Conserved Domains (9) summary
    smart00180
    Location:1659 → 1704
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    cd00055
    Location:1094 → 1141
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:3077 → 3233
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    PTZ00440
    Location:1755 → 2076
    PTZ00440; reticulocyte binding protein 2-like protein; Provisional
    pfam06009
    Location:2165 → 2286
    Laminin_II; Laminin Domain II
    pfam00052
    Location:1376 → 1516
    Laminin_B; Laminin B (Domain IV)
    pfam00053
    Location:1190 → 1238
    Laminin_EGF; Laminin EGF domain
    pfam00055
    Location:85 → 309
    Laminin_N; Laminin N-terminal (Domain VI)
    cl22861
    Location:2307 → 2447
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

  2. XM_037191209.1 → XP_037047104.1  laminin subunit alpha-1 isoform X2

    Conserved Domains (9) summary
    smart00180
    Location:1659 → 1704
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    smart00282
    Location:2312 → 2444
    LamG; Laminin G domain
    cd00055
    Location:906 → 949
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:2666 → 2830
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    PTZ00440
    Location:1755 → 2076
    PTZ00440; reticulocyte binding protein 2-like protein; Provisional
    pfam06009
    Location:2165 → 2286
    Laminin_II; Laminin Domain II
    pfam00052
    Location:1376 → 1516
    Laminin_B; Laminin B (Domain IV)
    pfam00053
    Location:1190 → 1238
    Laminin_EGF; Laminin EGF domain
    pfam00055
    Location:85 → 309
    Laminin_N; Laminin N-terminal (Domain VI)
Nucleotide Protein Strain
Heading Accession and Version

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