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LOC119081724 aspartyl/asparaginyl beta-hydroxylase-like [ Bradysia coprophila ]

Gene ID: 119081724, updated on 14-Dec-2023

Summary

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Gene symbol
LOC119081724
Gene description
aspartyl/asparaginyl beta-hydroxylase-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Bradysia coprophila
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Sciaroidea; Sciaridae; Bradysia
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Genomic context

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See LOC119081724 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
100 current BU_Bcop_v1 (GCF_014529535.1) Unplaced Scaffold NW_023503616.1 (2635787..2643838)

NW_023503616.1Genomic Context describing neighboring genes Neighboring gene Centrosomal protein 135kDa Neighboring gene Topoisomerase I-interacting protein Neighboring gene transient receptor potential cation channel protein painless-like Neighboring gene malignant T-cell-amplified sequence 1 homolog Neighboring gene Probable cytochrome P450 303a1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_023503616 Unplaced Scaffold Reference BU_Bcop_v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-aspartic acid 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-aspartic acid hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aspartyl/asparaginyl beta-hydroxylase-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bradysia coprophila Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BU_Bcop_v1

Genomic

  1. NW_023503616.1 Reference BU_Bcop_v1

    Range
    2635787..2643838
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037190867.1 → XP_037046762.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X1

    Conserved Domains (3) summary
    COG0457
    Location:655 → 853
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:760 → 784
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:895 → 1047
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  2. XM_037190868.1 → XP_037046763.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X2

    Conserved Domains (3) summary
    COG0457
    Location:637 → 835
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:742 → 766
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:877 → 1029
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  3. XM_037190869.1 → XP_037046764.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X3

    Conserved Domains (3) summary
    COG0457
    Location:600 → 798
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:705 → 729
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:840 → 992
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

RNA

  1. XR_005088521.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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